Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0491 ATGGATATTTGCAACAATGTATCAGTTTCAGGAGAGTTTCAACAAGAGTTTTCTTCCCTTGATGACCTTTTTGCAACTCACAACAAGGAAGTGGATATTGGGATGGAGTGGCTATCAGTGTTTGTTGAAGAATGTTTTTCAAGCAAACCAAGTTGTGTCATAGCACCTTCTAGTTCTAATGTTCAAATTCAAACAACTACATGTACCAACACAAAACCTTCAAACACAATGCAAAAACCTCAACAACAAGAACAAAATCAATCTTATTTACAAAATTTTGTTGTTCCTGGAAAAGCAAGAAGCAAAAGGAAAAGACTTTCAGCTCCTAGAACCAAAATTTGGTCACATAATTCACATCTTTTAAGTGATGCTATGTCTTTAGATCCACCTTTGTTGAAACAAAGTTATTGGTTAGCTGATAGTGAACTCATTGTTCCTAAAAGGAAAACCGAGCAAAAAGTCGTTGCAGTTGCACGCAGAGACACCTCGATTTACCAGAAGAAAAAAAGGGTAAAGCTTGAAATTAAGATTGAAAATAGTGATGATAAAAATAATTGTGATGATGTTGATGAACATGTTCCAAATGCAAGAAGGTGCACTCATTGTTTGTCTCAAAGGACCCCACAATGGAGGGCAGGACCATTGGGACCAAAGACATTATGCAATGCATGTGGTGTGAGGTACAAGTCTGGTAGGTTGTTGCCAGAGTATAGGCCAGCAAAGAGTCCTACTTTTGTTAGCTACTTGCATTCAAATTCACACAAGAAAGTTTTGGAGATGAGAATGCAATCTATTAATTAA 801 0.3683 MDICNNVSVSGEFQQEFSSLDDLFATHNKEVDIGMEWLSVFVEECFSSKPSCVIAPSSSNVQIQTTTCTNTKPSNTMQKPQQQEQNQSYLQNFVVPGKARSKRKRLSAPRTKIWSHNSHLLSDAMSLDPPLLKQSYWLADSELIVPKRKTEQKVVAVARRDTSIYQKKKRVKLEIKIENSDDKNNCDDVDEHVPNARRCTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMRMQSIN* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0491 266 ProSitePatterns GATA-type zinc finger domain. 199 224 IPR000679 GO:0006355|GO:0043565
Tpr5g0491 266 CDD ZnF_GATA 198 245 IPR000679 GO:0006355|GO:0043565
Tpr5g0491 266 ProSiteProfiles GATA-type zinc finger domain profile. 193 229 IPR000679 GO:0006355|GO:0043565
Tpr5g0491 266 Gene3D - 190 264 IPR013088 GO:0006355|GO:0008270
Tpr5g0491 266 Pfam GATA zinc finger 199 233 IPR000679 GO:0006355|GO:0043565
Tpr5g0491 266 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 264 - -
Tpr5g0491 266 PANTHER GATA TRANSCRIPTION FACTOR 1 264 - -
Tpr5g0491 266 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 256 - -
Tpr5g0491 266 SMART GATA_3 193 247 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0491 Tpr-Chr5 7337510 7339565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0491 35 263 C2C2-Gata Transcription Factor Family AT4G32890 42.489 3.13e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr5g0491 GATA 1.8e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0491 - - gmx:100776805 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1141 6 11468593 11470300 Tpr5g0491 5 7337510 7339565 PCT