Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0488 ATGGCCAAAGTTTGTAAGAAGTTTGACAGTGTTTCTGAGATTTTACCAAACAAGGATTGTGTTCGAATCAAGGTGCGTGTTCTTCGTATCTGGAAGATGTCTTCGTTCCTTAATCCTTCTGAAGTCAATTCAATTGAGATGGTTTTGGTTGATGAAAAGGGTGGAAAGATTCATGCCTCTATTAGGAAGCAGTTTTTATATATGTTTGAGTCTAAAATTGAAGAAGGACAAGTGTATCAGATGTCCTATTTTTCTGTTGTTCCTCAGACTGGTTTCTACAGAACTACTCTACATCCATACAAGCTATTATTCCAAATTAAGACAAAGGTTGTTGCTGTTAAGAGCTCTGATATATCTCATCATGGTCTCACATTGACAAGTTTGGCTGAAGTTTGTAGTCATGTCCATGATTATGAATTTTTAGTTGATGTTATGGGTTTGTTATCTGGAATTTCTGCTGAGAGGGAATATGTTAGGGATGGAAATGTTACAAAGATGGTTGTGTTGGAGTTGACTGATACTAGTGGGAAATGTGAATGTGCTTTGTTTGGGGATTATGTTGATGAGTTAAACAAGAAACTGGGCAAGACATCTGGTGGTCTCCCTGTGGTCGTAATTCAGTTTGCAAAGGTTAAGATATTTAGAGACCAAGCATCCATTCAAAATGTCATCAACACTACAAAGATTTTTGTGAATCCTGATATCCCTGAAGCTGATGCATTTAAGGATAGCATTGGTGTGCATGGTATTATGTTGGATGCCACTGTTTCTGTGATTGGGCCTCGTGCCAAACCTGCTATGGATGAAGAATTTCTGAGGATGTATCCAAAAAAAACTGTATCTGAACTAAGTGAAATGGAAGAGGAAGGGGTTTTTGCTGTTTTTGGGGTGGTTAGTTCTATTGTTCGTGGGGAGGATTGGTGGTATCCTGCATGCAAGTGTCATAAGTCTGTTATTGCTGATTCTGGGGCTTACTTTTGCAATGGATGCAACAAACATGTTTTTCAAGTTGTTCCAAGTTTTTTGGTTGGATTTCGTTTTATTTCATGTGTTTTACCTTGTCTTTGGTTATTAATCGATCCCAAAACTATGTGCAGCGGTTCCATAAGAATGCAATTTCGATCCTCATACAAGTGGGAATTGGTCGTTACTTCCTCAATCTCTAGGGGTAGAAATGTCCTGAATTTTCCCAGGGAATACACCAGAAATTGTTTAATGAACTCTGATAGGAAGATCTATCTTATTGATGTTGCATCTGGAAGAGTTTACAATTCAAAGATTTTTACTTCAGGTCAAAATAAAGAAAACAAATTTGTTTACTCTTGTTGGAAGCAATTTGTGACTGAGAACAAGTTGAAGTTCAGAGATAAGGTTATCTTCAATGCCACCACCGGTGATAATGTTATCGAAGTCCAGATCCTGCGTCGTCGCCGTCGTTCACGTTAG 1446 0.3817 MAKVCKKFDSVSEILPNKDCVRIKVRVLRIWKMSSFLNPSEVNSIEMVLVDEKGGKIHASIRKQFLYMFESKIEEGQVYQMSYFSVVPQTGFYRTTLHPYKLLFQIKTKVVAVKSSDISHHGLTLTSLAEVCSHVHDYEFLVDVMGLLSGISAEREYVRDGNVTKMVVLELTDTSGKCECALFGDYVDELNKKLGKTSGGLPVVVIQFAKVKIFRDQASIQNVINTTKIFVNPDIPEADAFKDSIGVHGIMLDATVSVIGPRAKPAMDEEFLRMYPKKTVSELSEMEEEGVFAVFGVVSSIVRGEDWWYPACKCHKSVIADSGAYFCNGCNKHVFQVVPSFLVGFRFISCVLPCLWLLIDPKTMCSGSIRMQFRSSYKWELVVTSSISRGRNVLNFPREYTRNCLMNSDRKIYLIDVASGRVYNSKIFTSGQNKENKFVYSCWKQFVTENKLKFRDKVIFNATTGDNVIEVQILRRRRRSR* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0488 481 Pfam B3 DNA binding domain 384 476 IPR003340 GO:0003677
Tpr5g0488 481 SUPERFAMILY Nucleic acid-binding proteins 275 343 IPR012340 -
Tpr5g0488 481 CDD RPA1_DBD_B_like 143 244 - -
Tpr5g0488 481 SUPERFAMILY DNA-binding pseudobarrel domain 379 478 IPR015300 -
Tpr5g0488 481 Gene3D - 6 112 IPR012340 -
Tpr5g0488 481 Gene3D - 116 249 IPR012340 -
Tpr5g0488 481 ProSiteProfiles B3 DNA-binding domain profile. 379 477 IPR003340 GO:0003677
Tpr5g0488 481 Pfam Domain of unknown function DUF223 46 116 IPR003871 -
Tpr5g0488 481 SUPERFAMILY Nucleic acid-binding proteins 125 252 IPR012340 -
Tpr5g0488 481 Gene3D - 370 478 IPR015300 -
Tpr5g0488 481 SUPERFAMILY Nucleic acid-binding proteins 7 113 IPR012340 -
Tpr5g0488 481 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 341 - -
Tpr5g0488 481 PANTHER REPLICATION FACTOR A 1, RFA1 20 341 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr5g0488 481 SMART B3_2 378 477 IPR003340 GO:0003677
Tpr5g0488 481 Gene3D - 269 350 IPR012340 -
Tpr5g0488 481 CDD RPA1_DBD_A_like 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0488 Tpr-Chr5 7309912 7312020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0488 16 332 Core DNA Replication Machinery Family AT5G08020 25.225 2.84e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr5g0488 B3 6.7e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0488 - - mtr:MTR_8g062030 402.134