Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0465 ATGGAAATTCAATTTGAAGAACCAAAGAGTTTGAGACCAAAAAGAGGTAACAAATTCAAAGGGAAAAACAAAAAGATTGAAACAAAAAACAAATTTGTTGGGGTGAGACAAAGACCATCAGGTAGATATGTTGCTGAGATTAAGGACACAACACAAAACATAAGAATGTGGCTTGGAACATTTGAAACAGCCGAGGAAGCTGCGAAAGCTTACGATGAAGCTGCGACACTTCTTCGAGGTTCCAACACTCGCACCAACTTCGTCACAAATGTTTCCTATGATTCGCCTCTCGCTTCGCGGATTCAAAGTCTTCTTAACAACCGAGGAAAAGGTACCAAACAACAGGAAGAAGATATGGATGTTAGAAGAAGCATCGCCAATCGTGCTAACACAGCTAGTGGTACTACTAATAGGACTAGGGCCGGTAGCACCACTAACAATACTAGCACGACTCGAGGTTATGTTAAAAGTACTAGTAGTACTACTAGAACTGGAAGTGTCGCTAGCACTAATAATGATATTAGCGGTATTACTAATAGTACTAGTGCTAGCAGCGTGACTAGCACTAATACTATTATTAGTACTAATTCGAGCGATAACAACATTCACAAAAACATTGAAAACACGATTTCTAGTGTGACAACAAAACAAAACAAAAAATTATTGGAGGATGCATATAGGCCAGATTTGAGCATTTTAAATGAGTATGAATCTAGTTTCAATAAGTCCAATGTTTCATGGGATTTTGGACCTATTTTTGATAATTTTCCTTTTGGTCAAGGGTTGGATATGAAAAACCATGATGGAATATTGTGTGATATGGTTGACTTAGGGGTTTCAGAATTTGAAAGGATGAAAGTTGAAAGGCAAATATCAGCTTCACTTTATGCAATAAATGGTGTGCAAGAGTACATGGAAACTGTTCAAGATTCCAATGAAGCTCTATGGAATCTTTCACCCTTGTGTTCATTTTTATGTTCAAACAAACAACATGTATGA 999 0.3724 MEIQFEEPKSLRPKRGNKFKGKNKKIETKNKFVGVRQRPSGRYVAEIKDTTQNIRMWLGTFETAEEAAKAYDEAATLLRGSNTRTNFVTNVSYDSPLASRIQSLLNNRGKGTKQQEEDMDVRRSIANRANTASGTTNRTRAGSTTNNTSTTRGYVKSTSSTTRTGSVASTNNDISGITNSTSASSVTSTNTIISTNSSDNNIHKNIENTISSVTTKQNKKLLEDAYRPDLSILNEYESSFNKSNVSWDFGPIFDNFPFGQGLDMKNHDGILCDMVDLGVSEFERMKVERQISASLYAINGVQEYMETVQDSNEALWNLSPLCSFLCSNKQHV* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0465 332 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Tpr5g0465 332 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Tpr5g0465 332 SMART rav1_2 31 95 IPR001471 GO:0003700|GO:0006355
Tpr5g0465 332 CDD AP2 31 87 IPR001471 GO:0003700|GO:0006355
Tpr5g0465 332 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 14 313 - -
Tpr5g0465 332 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 313 - -
Tpr5g0465 332 Gene3D AP2/ERF domain 30 90 IPR036955 GO:0003700|GO:0006355
Tpr5g0465 332 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Tpr5g0465 332 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Tpr5g0465 332 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Tpr5g0465 332 MobiDBLite consensus disorder prediction 126 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0465 Tpr-Chr5 7040278 7041482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0465 222 326 AP2-EREBP Transcription Factor Family AT5G19790 32.174 2.62e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr5g0465 AP2 5.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0465 K09286 - gmx:100796898 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1164 6 11747076 11748094 Tpr5g0465 5 7040278 7041482 PCT