Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0463 ATGAATGATCTTCTAACGGAATCGTTTGACATCCCCCGTGGCCGAGGTCATGGAGGTGGTGACGTTGAAATGGGGGAATACGGAAGGAATTCCGGAGAGATTAGCTTGGATAGTTTCTTCAAAAAGGTTCAAGAACTTGAGAAACAATATGCTAAGCTGGATAACCTTTTGAGAAAGCTTCAGGATGCTCATGAGGAGTCCAAAGCTGTTAGCAAAGCTCCTGCCATGAAGGCTATAAGGCAGAGAATGGATAAAGATGTCGATGAAGTTAAGAAAACTGCGCATTTCTTAAAGACCAAAGTTGAAGAGCTAGACAAAGAGAATTTGGCTAATAGACAGAAGCCTGGTTGCGGAAAAGGATCAGCTGTTGATCGGTCAAGAACAGCAACGACAATTAACTTGAAAAAGAAACTGAAGGACAAGATGGCTGAATTTCAGACCCTGAGAACAGCCATCCATGAAGAATATCGAGACATTGTTGAGAGACGTGTATTTACAGTAACGGGCAAAAGAGCTGATGAAGAGACAATTGACAGATTAATTGAGACCGGAGACAGTGAACAAATTTTCCAAAAGGCAATCCAGGAACAAGGACGAGGCCAGATAATGGATACCCTTGCAGAAATTCAAGAACGACACGAAGCAGTCAGAGATGTTGAGAGGAAACTGCTTGATTTACAACAGATATTTATGGATATTGCAGTGTTAGTTGATGCACAAGGAGACATGCTTAACAACATAGAATCACAGGTTACAAGTGCAGTAGATCATGTGCAGCGAGGTAACGATACTCTTATAAAGGCGAAGAAACTGCAAAAAAACTCGAGAAAATGGATGTGTATTGCCATCATGATATTTCTCATCATGGTTATGTTCATTGTTCTTTCTGTCCTCAAACCATGGGTTACTCATCAGGCATAG 921 0.4137 MNDLLTESFDIPRGRGHGGGDVEMGEYGRNSGEISLDSFFKKVQELEKQYAKLDNLLRKLQDAHEESKAVSKAPAMKAIRQRMDKDVDEVKKTAHFLKTKVEELDKENLANRQKPGCGKGSAVDRSRTATTINLKKKLKDKMAEFQTLRTAIHEEYRDIVERRVFTVTGKRADEETIDRLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHEAVRDVERKLLDLQQIFMDIAVLVDAQGDMLNNIESQVTSAVDHVQRGNDTLIKAKKLQKNSRKWMCIAIMIFLIMVMFIVLSVLKPWVTHQA* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0463 306 PANTHER SYNTAXIN 3 298 IPR045242 -
Tpr5g0463 306 Coils Coil 36 73 - -
Tpr5g0463 306 PANTHER - 3 298 - -
Tpr5g0463 306 SMART SynN_4 31 157 IPR006011 GO:0016020
Tpr5g0463 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Tpr5g0463 306 SMART tSNARE_6 201 268 IPR000727 -
Tpr5g0463 306 Coils Coil 87 107 - -
Tpr5g0463 306 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484|GO:0006886|GO:0016020
Tpr5g0463 306 CDD SynN 36 193 IPR006011 GO:0016020
Tpr5g0463 306 Pfam SNARE domain 242 294 IPR000727 -
Tpr5g0463 306 SUPERFAMILY t-snare proteins 35 261 IPR010989 GO:0016020|GO:0016192
Tpr5g0463 306 Pfam Syntaxin 38 241 IPR006011 GO:0016020
Tpr5g0463 306 Gene3D - 196 299 - -
Tpr5g0463 306 CDD SNARE_syntaxin1-like 205 267 - -
Tpr5g0463 306 Gene3D - 33 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0463 Tpr-Chr5 7031034 7035402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0463 1 302 SNARE and Associated Proteins AT3G03800 70.199 1.07e-150 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0463 K08486 - gmx:100306329 523.857