Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0439 ATGGCTGAGTCACAAAGTGGGGCTGGTAGTTCAGGAAACAAGCGTAGTAAAGGCACCAATGCTGGAAAGCGTGCAATGGCAGGAGTGACACAAGATGCATCGACTGTACCCCCGTGTGGTGCTTGCAAGTTCTTGAGGAGGAAGTGTAGTGATGGGTGTATCTTTGCACCCTACTTTGGGACAGACCAAGGTGCGGCTAGATTTGCTGCTGTGCACAAGGTTTTTGGTGCCAGCAATGTGTCCAAACTCTTGTCCAGTATTTCGACTAACCACCGCCATGAAGCCGCAGCAACTATTTCCTATGAGGCTCAGGCTCGGCTATCCGATCCTGTTTATGGTTGTGTGTCCACTATTCTTGCTTTGCAGCAACAGGTGGCTGCAATGCAAGCTGAAGTCTCAATGATGCATTCTCAGCTGATGAATCGGAGATATGCATATGCAAGTGCTCATCAAACCACACACCACCAGCAGCAGCATCAGATACTACAGCAACCAAACTTCAATGTATCTGTGCAGCCGGCATACTCCAACAACTCATCTGCTTCCACCAACAATTTCATGAACATGAATAGCTTCAACCCTGGTTTTGACCTCACAATGGAGACGGCACGTTCGTCACAGAGCTTAGAGCCTTTTCAAAACTCCAGGATGTCTCATTATGAGGAAGATGATTAA 675 0.4785 MAESQSGAGSSGNKRSKGTNAGKRAMAGVTQDASTVPPCGACKFLRRKCSDGCIFAPYFGTDQGAARFAAVHKVFGASNVSKLLSSISTNHRHEAAATISYEAQARLSDPVYGCVSTILALQQQVAAMQAEVSMMHSQLMNRRYAYASAHQTTHHQQQHQILQQPNFNVSVQPAYSNNSSASTNNFMNMNSFNPGFDLTMETARSSQSLEPFQNSRMSHYEEDD* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0439 224 MobiDBLite consensus disorder prediction 203 224 - -
Tpr5g0439 224 ProSiteProfiles LOB domain profile. 37 139 IPR004883 -
Tpr5g0439 224 PANTHER LOB DOMAIN CONTAINING PROTEIN 12 213 - -
Tpr5g0439 224 Pfam Lateral organ boundaries (LOB) domain 38 136 IPR004883 -
Tpr5g0439 224 MobiDBLite consensus disorder prediction 1 33 - -
Tpr5g0439 224 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 12 213 - -
Tpr5g0439 224 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0439 Tpr-Chr5 6606894 6608049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0439 1 224 AS2 family AT3G03760 52.610 2.12e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr5g0439 LOB 1.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0439 - - aprc:113866578 257.299