Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0438 ATGGCAGAATCACAAGGTGGTGATGTTAGTTCGGCAACTAGGCATAATAAAGGTGCCAATATTGCAAAGCTAGACACGGCGGGAGCAACACAAGAGGTAGCGGTTACAATGCCATGTGGGGTTTGCAAGTACTTGAAGAAGAAGTGTACTAGTGAATGTATCTCCGCACCCTACTATGGTAAAGGTGCAGCTAGCTTTGCGGCTGAGCACAGAGTGTTTGGTGCTAGCAATGTGTCGAAGCTCTTGTCCAACATTTCGACTAACCACCGCCACAAAGCAGCGGTGACTATATATCCTATGAGGCTCAGGCTAGGCTATCTGATCCCATTCTTGGTAGCTGCAATGCAAGTAGAAGTCTCAATGATGCAATCTCAGCTGATGAATCGGAGATATGCATATTCAAGTGCTCTACAAACCACACACCAGAAGCAGCATCAAATACAACAGCAACCAAACTTTAATGTATCTGTGCAGCCGGCATACTCCAACAACATCTGCTTCCACCAACAATTTCATGAACAAGAACAACTTCACCCAGGTTTTGACCTCACACTGGAGACGGCACCTTCTTCTCACAGCTTAGAGCCTTTTCAAAACTCCAGGATGTTGATATGA 615 0.4569 MAESQGGDVSSATRHNKGANIAKLDTAGATQEVAVTMPCGVCKYLKKKCTSECISAPYYGKGAASFAAEHRVFGASNVSKLLSNISTNHRHKAAVTIYPMRLRLGYLIPFLVAAMQVEVSMMQSQLMNRRYAYSSALQTTHQKQHQIQQQPNFNVSVQPAYSNNICFHQQFHEQEQLHPGFDLTLETAPSSHSLEPFQNSRMLI* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0438 204 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Tpr5g0438 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 17 97 - -
Tpr5g0438 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 112 193 - -
Tpr5g0438 204 Pfam Lateral organ boundaries (LOB) domain 38 98 IPR004883 -
Tpr5g0438 204 PANTHER LOB DOMAIN CONTAINING PROTEIN 112 193 - -
Tpr5g0438 204 PANTHER LOB DOMAIN CONTAINING PROTEIN 17 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0438 Tpr-Chr5 6601114 6602107 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0438 38 132 AS2 family AT3G03760 52.778 1.77e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr5g0438 LOB 2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0438 - - aprc:113866578 169.088