Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0437 ATGGCTGAGTCACAACGTGATGTTACAGTGCCATGTGGGGCTTGCAAGTACATGAAGAAAAAGTGTCCTAGTGAATGCATCTTCGCACCCTACTTTGGTAGGGAACAAGGTACAGCTAGCTTTGCGGCTGTGCACAAAGTGTTTGGTGCTAGCAACGTCTCTAAGCTCTTGTCCAACGTTTCAACTAACCGCCGCCACGAAGCAGCGGCAACTATATCCTATGAGGCTCAGGCTAGGCTATCCGATCCGGTTTATGGTTGTGTGTCCACCATTCTTGCTTTGCAGCAACAGGTGGCAGCAATGCAAGCAGAGGTCTCAATCATGCAAACTGAGCTGATAAACAGAAGATTTGCAGGTGCAAATGCTCTTCAAACTACACATCAGGAGCAGCATCAGACGCTACAGCAGCCAAACTTCAACGTTCAGCCAGCATATTCCAACAATTCATATGCTGCCACCAACAATTTCATGAACATGAACAACTTCAACCCTGGTTTTGACCTCACAATGGAGACGGCACCCTCATCACACGGCTTAGAGCCTTTTCAAAACTCTTGGTTCTCTCATTTTGAGGAAGATCACTAA 585 0.4701 MAESQRDVTVPCGACKYMKKKCPSECIFAPYFGREQGTASFAAVHKVFGASNVSKLLSNVSTNRRHEAAATISYEAQARLSDPVYGCVSTILALQQQVAAMQAEVSIMQTELINRRFAGANALQTTHQEQHQTLQQPNFNVQPAYSNNSYAATNNFMNMNNFNPGFDLTMETAPSSHGLEPFQNSWFSHFEEDH* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0437 194 Coils Coil 91 111 - -
Tpr5g0437 194 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Tpr5g0437 194 PANTHER LOB DOMAIN CONTAINING PROTEIN 4 171 - -
Tpr5g0437 194 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 4 171 - -
Tpr5g0437 194 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0437 Tpr-Chr5 6596633 6597524 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0437 11 182 AS2 family AT3G03760 58.101 8.57e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr5g0437 LOB 2.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0437 - - aprc:113866578 232.261