Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0436 ATGGCCGAGTCACAACGTGGTGATGGTAGTTCCAGAAACACGTGTAACAAAGACACCAATGCTGCAAAGCGTGCAATGACAGGAGCGACACGAGATGAATCGGTTATACCTCCTTGTGGGGCTTGCAAGTTCTTGAGGAGGAAGTGTAGTGGTGGGTGTATCTTTGCACCCTACTTTGGTAGGGACCAAGGTGCGGCTAGATTTGTGGCTGTGCACAAGGTGTTTGGTGCTAGCAATGTGTCCAAGCTATTGTCCAGTATTTCGACTAACCACCACCATGAAGCAGCAGCAACTATTTTCTATGAGGCTCAGGCTAGACTATCCGATCCTGTTTACGGTTGTGTGTCAACCATTCTTGCATTGCAGCAACAGGTGGCAGCAATGCAAGCAGAGGTCTCAATGATGCAAACTGAGCTGATGAACAGAGGATTTACTTGTGCAAATGCTCTTCAAACCACACCCCAGCAGCAGCATCAGATGCTACAGCAGCCAAACTTCAACATAGCAGTGCAGCCAGCATATGCCAACAACTCATGCTTCCACCAACAACCTCATGAACATGAACAACTTCAACCCTGGTTTTGA 585 0.4803 MAESQRGDGSSRNTCNKDTNAAKRAMTGATRDESVIPPCGACKFLRRKCSGGCIFAPYFGRDQGAARFVAVHKVFGASNVSKLLSSISTNHHHEAAATIFYEAQARLSDPVYGCVSTILALQQQVAAMQAEVSMMQTELMNRGFTCANALQTTPQQQHQMLQQPNFNIAVQPAYANNSCFHQQPHEHEQLQPWF* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0436 194 ProSiteProfiles LOB domain profile. 37 139 IPR004883 -
Tpr5g0436 194 Coils Coil 118 138 - -
Tpr5g0436 194 Pfam Lateral organ boundaries (LOB) domain 38 136 IPR004883 -
Tpr5g0436 194 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 11 185 - -
Tpr5g0436 194 MobiDBLite consensus disorder prediction 1 23 - -
Tpr5g0436 194 MobiDBLite consensus disorder prediction 1 29 - -
Tpr5g0436 194 PANTHER LOB DOMAIN CONTAINING PROTEIN 11 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0436 Tpr-Chr5 6590615 6594774 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0436 3 148 AS2 family AT3G03760 61.644 1.49e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr5g0436 LOB 1.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0436 - - aprc:113866578 207.994