Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0435 ATGGTTGAGTCACGAGGTGGTGATGGTAGTTCGGGAACTAGGCGTCGTATATGTGCCAATGGTGCAAAGCGAGCCATGGCGAGAGTAACACAAGAGGTATTGATTACAGTGCCATGTGGGGATTGCAAGTTCTTGAAGAGGAAGTGTACTAGAGAATGCATCTTTGCACTTTATTTTGGTACAGACCAAGGTGTAGGAAGCTTTGCGGCTGTGCACAAGGTGTTTGGTGCTAGCGATGTGTCGAAGCTCTTGTCCAATATTTCATCTAACCACTGCCACAAAGCAGTGGCGACTATATCCTATGAGGCTCAGACTAGGCTATCTGATCCGGTTTATGGTTGTGTGTCCACCATTCTGATTTTTTTGATAAGCGAGCAACAATCTCCTTAA 390 0.459 MVESRGGDGSSGTRRRICANGAKRAMARVTQEVLITVPCGDCKFLKRKCTRECIFALYFGTDQGVGSFAAVHKVFGASDVSKLLSNISSNHCHKAVATISYEAQTRLSDPVYGCVSTILIFLISEQQSP* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0435 129 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 22 119 - -
Tpr5g0435 129 Pfam Lateral organ boundaries (LOB) domain 38 119 IPR004883 -
Tpr5g0435 129 ProSiteProfiles LOB domain profile. 37 129 IPR004883 -
Tpr5g0435 129 PANTHER LOB DOMAIN CONTAINING PROTEIN 22 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0435 Tpr-Chr5 6589708 6590097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0435 38 121 AS2 family AT3G03760 72.619 1.93e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr5g0435 LOB 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0435 - - aprc:113866578 148.288