Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0434 ATGGCTGAGTCACAAGGTGGTGATGTTAGTTCGGGAACTAGGCGCAAACAAGGTGCAGCTAGCTTTGCGGCTGTGCACAAAGTGTTTGATGCTAACAATGTGTCGAAGCTCTTGTCCAATGTTTCAACAAACCACCACCACGAAGCAGTGGCTACTATATCCTATGAGGCTCAGACTAGGCTATCTGATCAGGTTTATGGTTATGTGTCCACCATTCTTGCTTTGCAGCAACAGGTGGCAGCAAAAGCGGAGATCTCAATGATGGAAACTGAGCTGATGAAAAGAGGATTTACATGTGAAAATGCTCTTCAAACAACACCCCAGCAGCAGCCTCAGATGTTACATCAGCCAAACTTCAACGTAGCAGTGCAGCCAGTATATTCCAACAATTCATATGGTTGCACCAACACCTCATGA 417 0.458 MAESQGGDVSSGTRRKQGAASFAAVHKVFDANNVSKLLSNVSTNHHHEAVATISYEAQTRLSDQVYGYVSTILALQQQVAAKAEISMMETELMKRGFTCENALQTTPQQQPQMLHQPNFNVAVQPVYSNNSYGCTNTS* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0434 138 PANTHER LOB DOMAIN CONTAINING PROTEIN 15 134 - -
Tpr5g0434 138 Pfam Lateral organ boundaries (LOB) domain 17 84 IPR004883 -
Tpr5g0434 138 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 15 134 - -
Tpr5g0434 138 ProSiteProfiles LOB domain profile. 1 92 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0434 Tpr-Chr5 6587209 6588443 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0434 17 93 AS2 family AT3G03760 67.949 6.09e-29 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr5g0434 LOB 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0434 - - gmx:100813769 134.035