Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0415 ATGGTGTATTGTGATCACTGTTGTAGATGCGTCGATGGAATGCGAGTTGATGATGGACATTTATGTTGTGAGGATTGTGGGAAGCTGTTGGAAGATTATTATTTTTCTAGTGAACCAACTTTTGTGAAAAATTCTGCTGGACAGAGCAAATTATCTGGCAATTTGGTAAGGGGTGTTCACAATGACATCTCTGAATCACGTGCAAGGACTATAGAAAGAGCTAAAGATTATATCAGTAATCTAAGTCGCACCCTTGGAGTGGATGATGCAAGTATGGTTGACGAAGCTGTGGCCTTTTATACAATAGGACTAGAGCAAAAGTTTACCAAGGGACGAAAATCAGAACATGTACAAGCTGCTTGTCTCTATATTGCATTCCGGGATAAACAAAAGCCATACCTTCTTATTGAATTTTCAAATTGTTTAAGGACAAATGTTTATGCGCTTGGCGCAGTTTTTTTGCAGCTTTGTAAATTGTTAAGGCTTCAAAATCACCCGATTGTTCAAAAGCTTGTTGATCCCTCTCTTTTTATTTCCAAATTTACGAATAATTTGTTAAAGCAGAGGAATATAGCTGTCTCAAACACTGCACTTAATATTATTGTCAGAATGAAACGTGACTGGATGCAGACAGGGAGGAAGCCTGGCGGAATATGCGGTGCAGCACTATACATGGCTGCTCTTGCACATGGTTTTACATGCTCTAAATCAGATATTCTAAGAATCGTCCATGTATGTGAAGCAACATTGACCAAGCGACTGGTAGAGTTTGAGGATACAGAATCTTCCAGCTTGACCATTGATGAGTTGAATGCAATGGCAAAAGATAATGAAAGCACTCTAATTAAAATACCAAATGGTGAACTGGACAAAAAGGATCTACTGTGTCAACACAAAGAGGATGACGAAGTACCCCCCCACTTTGCACTTGGATTGTGTGAAACATGTTACAAGGATTTTGTGAAACTCTCTGGTGGACTTGATTGTGGTCATGATCCTCCTGCATTCCAGCATGCTGAGAGGGAGAGAACGGTAAAGTCACAATCCGAGGAGAATGCTAATCAATCAGCTGATTTTGCAATGGATTCAAATGGTGCATACGAGGGCCAAATAGAGTCACATGCCTCTGAGCCTGAAAGAATTGGGCGTGATGAAGAATATGTGGCCACAAAAGATGGTGAGCATGGTAAGTCACATATAGAAGATGATATGAACGCAAAAACTCAAGATGAATCAGAAAGTCTCTCTGATATTGAAGATAAGGAGGTTGATGGCTACCTTTACAGTGAGGAGGAAAAACAATATAAGAAGAAAATATGGGAATTTAATAATCGAGAGTATCTTGAGGAACAAGCTATTAAGGAAGCAGCTGCAGCAGCTGAAAGGAGAAAATTAGAGGAGGAGTTAAAAAATTGTTCTCCTGAAACTCTTGAAGCACGAAAACTTAAATCATCTGTTGCTGCAGATGTGGCAAAATCCAAAAAGGAGGCGAGGCAGAAACGAGCTCAAGAGGCAAAAAATTTAGGTCCTGCTCAATCTGCTGTAGAGGCAACTAGTCGAATGTTGAAAACAAAGAGGCTCAGCTCCAAAGTCAATTCTGATGTCTTGGAGAAATTATTTGATAAACCTGAAGTTCAAGAGAATCATAAGAAAGCACGGTTTGATTCACCCTCAGACAATGATGATAATTTGGAATCGAAGTCAAAGCACAAAGTAAAGGAGGATGACATGGAACCAGCCGAGGAATTCGTTGATGATGTTGATATGGTTGGAGAATATGGTGACATTTTGTATCCAGAAAATGGAGAATATGAGACATATGAGGAAGGTGGTGGTTACCGTGGATATGATGAATATGATGGATATGATGGTTTTTAG 1878 0.3967 MVYCDHCCRCVDGMRVDDGHLCCEDCGKLLEDYYFSSEPTFVKNSAGQSKLSGNLVRGVHNDISESRARTIERAKDYISNLSRTLGVDDASMVDEAVAFYTIGLEQKFTKGRKSEHVQAACLYIAFRDKQKPYLLIEFSNCLRTNVYALGAVFLQLCKLLRLQNHPIVQKLVDPSLFISKFTNNLLKQRNIAVSNTALNIIVRMKRDWMQTGRKPGGICGAALYMAALAHGFTCSKSDILRIVHVCEATLTKRLVEFEDTESSSLTIDELNAMAKDNESTLIKIPNGELDKKDLLCQHKEDDEVPPHFALGLCETCYKDFVKLSGGLDCGHDPPAFQHAERERTVKSQSEENANQSADFAMDSNGAYEGQIESHASEPERIGRDEEYVATKDGEHGKSHIEDDMNAKTQDESESLSDIEDKEVDGYLYSEEEKQYKKKIWEFNNREYLEEQAIKEAAAAAERRKLEEELKNCSPETLEARKLKSSVAADVAKSKKEARQKRAQEAKNLGPAQSAVEATSRMLKTKRLSSKVNSDVLEKLFDKPEVQENHKKARFDSPSDNDDNLESKSKHKVKEDDMEPAEEFVDDVDMVGEYGDILYPENGEYETYEEGGGYRGYDEYDGYDGF* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0415 625 Gene3D Single helix bin 395 458 - -
Tpr5g0415 625 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 544 IPR000812 GO:0006352|GO:0070897
Tpr5g0415 625 Pfam Transcription factor TFIIB repeat 69 157 IPR013150 GO:0017025
Tpr5g0415 625 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Tpr5g0415 625 SUPERFAMILY Cyclin-like 171 268 IPR036915 -
Tpr5g0415 625 Pfam Brf1-like TBP-binding domain 416 541 IPR011665 -
Tpr5g0415 625 MobiDBLite consensus disorder prediction 485 503 - -
Tpr5g0415 625 MobiDBLite consensus disorder prediction 539 578 - -
Tpr5g0415 625 SMART cyclin_7 176 259 IPR013763 -
Tpr5g0415 625 SMART cyclin_7 76 158 IPR013763 -
Tpr5g0415 625 Gene3D - 173 267 - -
Tpr5g0415 625 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Tpr5g0415 625 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Tpr5g0415 625 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Tpr5g0415 625 CDD CYCLIN 173 248 IPR013763 -
Tpr5g0415 625 MobiDBLite consensus disorder prediction 539 586 - -
Tpr5g0415 625 MobiDBLite consensus disorder prediction 600 625 - -
Tpr5g0415 625 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 544 IPR029529 GO:0000126|GO:0000995|GO:0006383
Tpr5g0415 625 MobiDBLite consensus disorder prediction 391 416 - -
Tpr5g0415 625 Coils Coil 448 468 - -
Tpr5g0415 625 MobiDBLite consensus disorder prediction 481 523 - -
Tpr5g0415 625 SUPERFAMILY Cyclin-like 73 163 IPR036915 -
Tpr5g0415 625 CDD CYCLIN 74 143 IPR013763 -
Tpr5g0415 625 Gene3D - 63 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0415 Tpr-Chr5 6398524 6413542 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0415 1 525 Inorganic Solute Cotransporters AT2G01280 43.527 6.05e-115 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0415 K15196 - gmx:100789154 655.595