Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0403 ATGTCTGAAAATACCGAAATAGCCTTTAATATTTTGAAACCTTTAGTGACTAATTCTCATGAGAAACTTGTTACAAACACTGAAGGGAATAAAGGATATTTTGGGGATGAGGAGAAAAATATGTCTTTGAAAGTTGATGAGGAGGAAAATGATGGTACAAATGTTTCTTTGGAAACAAAAAAAATTGGGAACGATAAATTTTTTATTAGAGGTCATTGGACACCAGTAGAAGATGATAAGCTTATAAAACTTGTTAAAGATTTTGGTCCTTACAATTGGAACAACATTGCTAAACATTTTCATGGAAGATCAGGGAAAAGTTGCAGATTAAGATGGCGTAATCAACTAGATCCTAAGATTAATAGAAGATGTTTTAGTGAAGAGGAAGAGGTGAAGCTCTTGGCTGCTCAAAATTTTTTTGCCAACAAATGGACAATCATTTGTAACCTATTTCATGGAAGGACAGACAATGCAGTTAAGAATCATTTTAATATTATGATGGCTAGGAGGAAAAGGGAGAAATCATCAGATTTTTCTAGAAAGAGAAAGCCAACATTTGTAGCAAGTGAATCAATCACTAGTACCATTGATGTATCTAATTCAGCTTGCACTACTCTCAGGCTTTTTGGTAGGCCTTTATTTAATTATCAAGCCTATATTTCACAAATGGGTTTACCTGGAGAAAGGAAGGAGGAAGCGGGAGATTTTGGCTATGATATGGGAAAGCCTAAGAGTGTGAACCAATTCAATTATTCATATTCAAATTCAGAAGCTTTAGCAAAGTCAGTTGCAACAATTAGGAATAATGTATTGGGGGAAAGTGAAAATGTGAGAGGTACGATTAAGGTGTCATTTATTGATTTTCTTGGAGTGGGTGATACATAG 885 0.3435 MSENTEIAFNILKPLVTNSHEKLVTNTEGNKGYFGDEEKNMSLKVDEEENDGTNVSLETKKIGNDKFFIRGHWTPVEDDKLIKLVKDFGPYNWNNIAKHFHGRSGKSCRLRWRNQLDPKINRRCFSEEEEVKLLAAQNFFANKWTIICNLFHGRTDNAVKNHFNIMMARRKREKSSDFSRKRKPTFVASESITSTIDVSNSACTTLRLFGRPLFNYQAYISQMGLPGERKEEAGDFGYDMGKPKSVNQFNYSYSNSEALAKSVATIRNNVLGESENVRGTIKVSFIDFLGVGDT* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0403 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 171 IPR017930 -
Tpr5g0403 294 SUPERFAMILY Homeodomain-like 70 167 IPR009057 -
Tpr5g0403 294 SMART sant 121 169 IPR001005 -
Tpr5g0403 294 SMART sant 69 118 IPR001005 -
Tpr5g0403 294 CDD SANT 73 114 IPR001005 -
Tpr5g0403 294 Gene3D - 123 188 - -
Tpr5g0403 294 ProSiteProfiles Myb-like domain profile. 117 167 IPR001005 -
Tpr5g0403 294 PANTHER MYB PROTEIN-RELATED 17 294 - -
Tpr5g0403 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 120 IPR017930 -
Tpr5g0403 294 CDD SANT 125 164 IPR001005 -
Tpr5g0403 294 Gene3D - 69 121 - -
Tpr5g0403 294 ProSiteProfiles Myb-like domain profile. 70 116 IPR001005 -
Tpr5g0403 294 Pfam Myb-like DNA-binding domain 73 133 - -
Tpr5g0403 294 PANTHER OS08G0435700 PROTEIN 17 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0403 Tpr-Chr5 6209843 6211493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0403 16 191 MYB Transcription Factor Family AT5G17800 46.196 1.00e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr5g0403 Myb_DNA-bind_6 4.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0403 K09422 - jre:109000849 234.187