Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0402 ATGTCTTCTAGATCACAAAGGGGTGCTGGAAAAGGAAAAGATATGGATAATACTTCCCAAGTTGAACAACCCCCAAGGAAGAAGAGACTTGTTAAGGGTGGTACTTCTAAAACCACTACTGGAAGGTCCGTTAGAGTTCCACATCAACTCGGGCAACATCCTCAAGTGTTTTCTGTTCATGGTACTACTGATGTACCAGCACCACACCAGATGCAGCCCTTCAGTTTCAAGTTCTACACTGAAGCATGTGAAGAAAGGTACAATAAAATTCGTGAATTTTCCTTTAATCAAGAGAGTGGATTTGATGAGGATGTGGAGAGTGGAGTGCCTGAGATTGCACATCAATTGCATGATAGAAATATGAGTTCACAAAATTTTAACAATAATGATTTGTCTTTGGATTTGAATGTTTCTTTGGAAACAGAGAATTTTGAGAACACTGATTATTCTATTAGAGGTCGTTGGACAAGATCTGAAGATGATAAGCTTAATAAGCTTGTTAAATACTTTGGTCCTCGTAATTGGAACCACATTGCTGAGCATTTTCATGGAAGATCAGAGAAAAGTTGCAGATTAAGGTGGATTAATCAACTAGATCCTAAAATTAACAGATCAAAATTCAGTAAAGAAGAGAAGGCGAAGCTTTTGGCTGCTCAGAGATTTTATGGTAACAACTGGGCAACCATTTGCAAACTATTTCCTGGACGAACAAACAATCAAGTTAAGAATCATTTTTATATGATGATGGCTAAGATGCAAAGGGAGAAATCATCAAGTTTCTCTCGAATGGGAAATTCAATATTTCGAACCCCTCCAACGATGTACCGAATTACAAGCACCACTGATGTACCGAATTCAGCTTGCACCAATGTCAGCTGCTTTACTGGGCCTTTACTTTATCGTCAAGCCTATGGTTCACAAATGGGTTTACATGGAGAGAGGAAGGTGGAAGTGGGGAATTTTGGTTATGAAACCAATTTTAGTGCAATGAAAGGTTCATATGTAAGTCGTATGGGAAAGATTAATGGTGTGGATAAATCTAATTATTCATATTCAAACTCAGAAGCTTCGGTATCAGAGGCAGGTTCAACAATCAGGACCAATGTATCCATTTTTGGGGAATGTGAAAATGTGAGGAGTAAGACTAAGCTGCAATATTTCGACTTCCTTGGAATAGGAGATAAATAG 1188 0.383 MSSRSQRGAGKGKDMDNTSQVEQPPRKKRLVKGGTSKTTTGRSVRVPHQLGQHPQVFSVHGTTDVPAPHQMQPFSFKFYTEACEERYNKIREFSFNQESGFDEDVESGVPEIAHQLHDRNMSSQNFNNNDLSLDLNVSLETENFENTDYSIRGRWTRSEDDKLNKLVKYFGPRNWNHIAEHFHGRSEKSCRLRWINQLDPKINRSKFSKEEKAKLLAAQRFYGNNWATICKLFPGRTNNQVKNHFYMMMAKMQREKSSSFSRMGNSIFRTPPTMYRITSTTDVPNSACTNVSCFTGPLLYRQAYGSQMGLHGERKVEVGNFGYETNFSAMKGSYVSRMGKINGVDKSNYSYSNSEASVSEAGSTIRTNVSIFGECENVRSKTKLQYFDFLGIGDK* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0402 395 CDD SANT 206 249 IPR001005 -
Tpr5g0402 395 Pfam Myb-like DNA-binding domain 155 215 - -
Tpr5g0402 395 Gene3D - 151 203 - -
Tpr5g0402 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 253 IPR017930 -
Tpr5g0402 395 ProSiteProfiles Myb-like domain profile. 152 198 IPR001005 -
Tpr5g0402 395 SUPERFAMILY Homeodomain-like 152 249 IPR009057 -
Tpr5g0402 395 MobiDBLite consensus disorder prediction 1 19 - -
Tpr5g0402 395 SMART sant 151 200 IPR001005 -
Tpr5g0402 395 SMART sant 203 251 IPR001005 -
Tpr5g0402 395 MobiDBLite consensus disorder prediction 1 46 - -
Tpr5g0402 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 202 IPR017930 -
Tpr5g0402 395 CDD SANT 154 196 IPR001005 -
Tpr5g0402 395 ProSiteProfiles Myb-like domain profile. 199 249 IPR001005 -
Tpr5g0402 395 PANTHER OS08G0435700 PROTEIN 123 394 - -
Tpr5g0402 395 PANTHER MYB PROTEIN-RELATED 123 394 - -
Tpr5g0402 395 Gene3D - 205 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0402 Tpr-Chr5 6187461 6190597 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0402 135 393 MYB Transcription Factor Family AT4G33450 37.358 4.80e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr5g0402 Myb_DNA-bind_6 3.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0402 K09422 - gmx:100776882 204.912