Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0400 ATGAGTTCACTAAATTTTAACAATAACGATTTGTCTTTGGATTTGAATGTTTCTTTGGAAACAGAGAATTTTGAGAACACTGATTATTTTATTAGAGGTCGTTGGACAAGATCTGAAGATGATAAGCTTAATAACCTTGTTAAATACTTTGGTCCTCGTAATTGGAACCATATTGCTGAGCATTTTCATGGAAGATCAGGGAAAAGTTGCAGAGCAAGATGGATTAATCAACTAGATCCTAAAATTAACGGATCAAAATTCAATAAAGAAGAGAAGGTGAAGTTTTTGGCTGCTCAGAGAGATTATGGTAACAAATGGGCAACCATTTGCAAACTATTTCCTGGACGAACAAACAATCAAGTTAAGAATCATTTTTATATGATGATGGCTAAGATGCAAAGGGAGCAATCATCAAGTTTCTCTCGAATGGGAAATTCAATATTTCGAACCCCTCCAACGATGTACCGAATTACAAACACCACTGATGTACCGAATTCAGCTTGCACCAATGTCAACCGCTTTACTAGGCCTTTACTTTATTGTCAAGCCTATGGTTCACAAATGGGTTTACATGGAGAAAGGAAGGTGGTAGTGGGGAATTTTGGTTATGAAACCAATTTTAGTGCAATGAAAGGTTCATATGTAGGTCATATGGGAAAAATTAACAGTGCGGATAAATCTAATTTTCATATTCAAACTCAGAAGCTTCGGTATCAGAGTCAAGTACAACCATCAGGACTAATGTATCCATTTTTGGGGAATGTGAAAATGTTGCAATATTTCGACTTCCTTGGAATAGGAGATAAATAG 810 0.358 MSSLNFNNNDLSLDLNVSLETENFENTDYFIRGRWTRSEDDKLNNLVKYFGPRNWNHIAEHFHGRSGKSCRARWINQLDPKINGSKFNKEEKVKFLAAQRDYGNKWATICKLFPGRTNNQVKNHFYMMMAKMQREQSSSFSRMGNSIFRTPPTMYRITNTTDVPNSACTNVNRFTRPLLYCQAYGSQMGLHGERKVVVGNFGYETNFSAMKGSYVGHMGKINSADKSNFHIQTQKLRYQSQVQPSGLMYPFLGNVKMLQYFDFLGIGDK* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0400 269 ProSiteProfiles Myb-like domain profile. 32 78 IPR001005 -
Tpr5g0400 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 82 IPR017930 -
Tpr5g0400 269 Gene3D - 88 145 - -
Tpr5g0400 269 PANTHER MYB PROTEIN-RELATED 18 212 - -
Tpr5g0400 269 CDD SANT 34 76 IPR001005 -
Tpr5g0400 269 Gene3D - 31 83 - -
Tpr5g0400 269 SUPERFAMILY Homeodomain-like 32 129 IPR009057 -
Tpr5g0400 269 PANTHER OS08G0435700 PROTEIN 18 212 - -
Tpr5g0400 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 133 IPR017930 -
Tpr5g0400 269 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Tpr5g0400 269 Pfam Myb-like DNA-binding domain 35 92 - -
Tpr5g0400 269 CDD SANT 86 129 IPR001005 -
Tpr5g0400 269 SMART sant 31 80 IPR001005 -
Tpr5g0400 269 SMART sant 83 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0400 Tpr-Chr5 6164688 6166361 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0400 32 267 MYB Transcription Factor Family AT1G69560 37.860 2.05e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr5g0400 Myb_DNA-bind_6 4.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0400 K09422 - jre:109000849 168.318