Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0399 ATGAAGTTCAGACATGAGAATTTTGAGAACACTGATTATTCTATTAGAGGTCGTTGGACAAGATCTGAAGATGATAAGCTTAATAAGCTTGTTAAATACTTTGGTCCTCGTAATTGGAACCACATTGCTGAGCATTTTCATGGAAGATCAGAGAAAAGTTGCAGATTAAGGTGGATTAATCAACTAGATCCTAAAATTAACGGATCAAAATTCAGTAAAGAAGAGAAGGCGAAGCTTTTGGCTGCTCAAAGATATTATGGTAACAATTGGGCAACCATTTGCAAACTATTTCCTGGACGAACAAACAATCAAGTTAAGAATCAGTTTTATATGATGATGGGTAAGATGCAAAGGGAGCAATCATCAAGTTTATCTCGAATGGGAAATTCAATATTTCGAACCCCTCCAACGATGTACCGAATTACAAGCACCACTGATGTACCGAATTCAACTTGCACCAATGTCAGCCGCTTTGCTGGGCCTTTACTTTATCGTCAAGCCTATGGTTCACAAATGGGTTTACATGGAGAGAGGAAGGTGGAAGTGCGGAATTTTGGTTATGATACCAATTTTAGTGCAATGAAAGGTTCATATGTAAGTCGTATGGGAAAGATTAATGGTGTGGATAAATCTAATTATTCATATTCAAACTCAGAAGCTTCGGTATCAGAGTCAGGTTCAACAATCAGGACCAATGTATCCATTTTCGGGGAATGTGAAAATGTGAGGAGTAAGACTAAGCTGCAATATTTCGACTTCCTTGGAATAGGAGATAAATAG 780 0.3769 MKFRHENFENTDYSIRGRWTRSEDDKLNKLVKYFGPRNWNHIAEHFHGRSEKSCRLRWINQLDPKINGSKFSKEEKAKLLAAQRYYGNNWATICKLFPGRTNNQVKNQFYMMMGKMQREQSSSLSRMGNSIFRTPPTMYRITSTTDVPNSTCTNVSRFAGPLLYRQAYGSQMGLHGERKVEVRNFGYDTNFSAMKGSYVSRMGKINGVDKSNYSYSNSEASVSESGSTIRTNVSIFGECENVRSKTKLQYFDFLGIGDK* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0399 259 SMART sant 67 115 IPR001005 -
Tpr5g0399 259 SMART sant 15 64 IPR001005 -
Tpr5g0399 259 Gene3D - 69 128 - -
Tpr5g0399 259 ProSiteProfiles Myb-like domain profile. 16 62 IPR001005 -
Tpr5g0399 259 SUPERFAMILY Homeodomain-like 16 113 IPR009057 -
Tpr5g0399 259 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tpr5g0399 259 CDD SANT 18 60 IPR001005 -
Tpr5g0399 259 Pfam Myb-like DNA-binding domain 19 79 - -
Tpr5g0399 259 PANTHER OS08G0435700 PROTEIN 7 258 - -
Tpr5g0399 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Tpr5g0399 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 66 IPR017930 -
Tpr5g0399 259 PANTHER MYB PROTEIN-RELATED 7 258 - -
Tpr5g0399 259 CDD SANT 70 113 IPR001005 -
Tpr5g0399 259 Gene3D - 15 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0399 Tpr-Chr5 6139835 6144792 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0399 1 257 MYB Transcription Factor Family AT5G17800 35.094 5.44e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr5g0399 Myb_DNA-bind_6 4.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0399 K09422 - jre:109000849 189.889