Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0396 ATGGGAAGCAGAAAGGAAGAAGAGAAGATTGAAAAAATTATTAGGGGTCTTATGAAGCTTCCGCCAAATCGAAGATGTATCAACTGTAATAGTTTGGGACCTCAGTATGTATGTACAACATTTTGGACCTTCGTTTGCATTACTTGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTGTCAATGTCAAAGTTCACTTTCCAAGAAGTTGATGCTCTTCAAAATGGTGGTAATCAGCGTGCAAGGGAAATATATTTGAAAAATTGGGATTTCCAAATACAGCGGTTGCCAGATAGCAGCAACGTTGGTAAAGTGAGGGAGTTCATGAAGAATGTATATGTGGATAAAAGATATGCCGGAACAATATCGTCTGAAAGACCTCCAAGAGATGCACAGAACCCCATAATTCATGAAGACGAGGTTAGGCGTGCCAGTTCTTACCATTCATATTCACAAAGCCCTCCATATGATAATCAATATGAGGATCGACGGTATGGGAAGCAAGCAGGGGCACTGACAAGGAAGCCTGGTTCAGATAAAGTCCGTTATGAAGGGAAGATGTCTAGTATTATCTATAGTCCTGGTCGTTTCAGTGATCACACATATGATGATAGATTTGCAAATGAGGGATCTGGTCCAAGAAATTCCGACTTTTCCGTGTCGAGTGGTCATGAGCAATTCAAACCCAATGTTCAGTCTCCTAAGTTTCATAAGGACATTGAGTTTAACAGTGCATCTTATAAGCGTCCTGGTTCTACTTCAAGTGAAGATGTGTGGACTCAAGCAAAAAATGCAGCTCTTGAATCTAATGCCGCTGCCAAGAGAGATGCAGATGGAATTCATCGTCCGCAGAGAACTACATCATTGCAATCGACAGACAGCAACCTTTCGACCTTAAGATCTTACAATTCTGTTGGTTCAGTTGATTTTTTCTCCGAAGCTGTCCAATCTTCAGGGTCCTTTCAAGATAAAGCATTAGGAGTTTCGCTGACATCTGGTCCTGTAAGATCTGTTAGCTTTGACCGTTCTAAGGCACAAGTGGCATCTGCTTCATCTGTTGATCTTTTTCAAACAGCTGCACCATCTCAATCTGCATTGGGAGATCTGTTTCAATTGTCTGATATGGAAGCAGCTCCATCTTTCAACGGAAATCAACCTCTGCAAACATCCCAAGTCGCATCTGTTAACTTCTTTGTAGATATTCCTCAGCAGCCTTCTGCTGCCACCTCAGATGCAAAATCAGCGGAGTTATCTGTCCCTAAAAATGAAGGGTGGGCAACATTTGATACGCCTCAGTTCACATCATCTACTGCACAAGTGGAAGTTCCAGTGGCAGCATTTAATACACCTCAGTTCACATCATCTACTGCACAAGTGGAAATTCCGGCAGCAGCATTTGATACACCTCAGTTCACATCATCTACTGCACAAGTGGAAATTTCTGCAGCAGCATTTGATACACCTCAGTTCACATCATCTACTGCACAAGTGGAATTTCCAGCAGCAGCAGCAGCACCTTCAAGTGCTGAATCTTTGCAGGGTAGATTTGATCCATTTTCAAATGCAAATATGCAATGGCCATCTTTTGAAATTTCTAGTGCGGGTGTACCTTCTTCTGTTACATCGAATGTATGGCATGATGGTGTATGGAATGGAGAAAAACAAGTTCCTGTTATGGCAACAAACACTCAACCATGGAATGCATTTGAAGATTCTGGTACCCATCTTCCTGTGGATGGCAATAATCAAGGTTTACAATTGCACAATTTCCCATCAGAAAGTTTTGGTTTAAACGCTTCTGAGAGACCCAGTAATGATGGAATCCAAGGTGTTGCTCCTATCGGAGGATTTGATAATCATGAATTCCTTTCAAATGGAGACATTCAACTTAATGGAATCAATCGTAAATCGACAAATCCATTTGATTTTCCCTTCGATTCTGATGTAGATCAGAGTGATATGTTCCTTGATATGAGCTCTTTGCAAGCTGCTCTGCCAGATGCCCTCTTGCCTGCCGCATTTGGTGGTATCGCTGAACCCTGGCTCCCTCAAAATACAGCGACTCCATATATTTCCTCTGCAGGAGAAGGTGGTTTCTCATTCATGACAGTGCAAACGCCAAGCTCTCAATTACAGAACATCCAAGCACAGGAACCAGTTGCTTCAGTTGGGAGAAATCCTTTTGCATAG 2199 0.4225 MGSRKEEEKIEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCITCSGIHREFTHRVKSVSMSKFTFQEVDALQNGGNQRAREIYLKNWDFQIQRLPDSSNVGKVREFMKNVYVDKRYAGTISSERPPRDAQNPIIHEDEVRRASSYHSYSQSPPYDNQYEDRRYGKQAGALTRKPGSDKVRYEGKMSSIIYSPGRFSDHTYDDRFANEGSGPRNSDFSVSSGHEQFKPNVQSPKFHKDIEFNSASYKRPGSTSSEDVWTQAKNAALESNAAAKRDADGIHRPQRTTSLQSTDSNLSTLRSYNSVGSVDFFSEAVQSSGSFQDKALGVSLTSGPVRSVSFDRSKAQVASASSVDLFQTAAPSQSALGDLFQLSDMEAAPSFNGNQPLQTSQVASVNFFVDIPQQPSAATSDAKSAELSVPKNEGWATFDTPQFTSSTAQVEVPVAAFNTPQFTSSTAQVEIPAAAFDTPQFTSSTAQVEISAAAFDTPQFTSSTAQVEFPAAAAAPSSAESLQGRFDPFSNANMQWPSFEISSAGVPSSVTSNVWHDGVWNGEKQVPVMATNTQPWNAFEDSGTHLPVDGNNQGLQLHNFPSESFGLNASERPSNDGIQGVAPIGGFDNHEFLSNGDIQLNGINRKSTNPFDFPFDSDVDQSDMFLDMSSLQAALPDALLPAAFGGIAEPWLPQNTATPYISSAGEGGFSFMTVQTPSSQLQNIQAQEPVASVGRNPFA* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0396 732 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 732 - -
Tpr5g0396 732 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Tpr5g0396 732 PANTHER ARFGAP/RECO-RELATED 1 732 IPR044820 GO:0005096
Tpr5g0396 732 MobiDBLite consensus disorder prediction 144 165 - -
Tpr5g0396 732 MobiDBLite consensus disorder prediction 272 297 - -
Tpr5g0396 732 Gene3D Arf GTPase activating protein 2 129 IPR038508 -
Tpr5g0396 732 CDD ArfGap_AGFG 15 121 - -
Tpr5g0396 732 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Tpr5g0396 732 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Tpr5g0396 732 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Tpr5g0396 732 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Tpr5g0396 732 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Tpr5g0396 732 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0396 Tpr-Chr5 6091276 6099193 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0396 14 88 C2H2 Transcription Factor Family AT4G05330 36.709 8.47e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0396 K15044 - gmx:100788316 967.222