Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0371 ATGGCAATGCTACTCTTCTTCATTATTGTGATTTCTGCTGCTGGAGATAGTTACTCTTCTTCTCCACCACCTTATGAGGTTAAGACACTTGAGGGACAAGGAGTGCCTTTAGATCAAGCTGAATCCAACCTGCCCAAAATCAAAGCAGAAGTGCAGAACTCACAGGACTTCCAAATAATATTCGGGACCGGCCCTGACATCGAACAAAGTCTTGATTGGAAGCTGAGGCAAGCGGAGAATGACAAGGTGACTATTAATGTTAACCCAAATGGTAGTGGTGATTTCATGACCATTACTGAAGCTATCAACAGCATTCCAGCACCCAACAGCAGAAGAGTAGTTGTTTTCATTGCGCCCGGTCTTTACAGGGAGAAAATTGTGATCCCTCGAGATTTGGATTTCATAACATTCTTAGGGGATGCAACGAAGAAACCAATTATTACCGGAAATGATAGATCATCTACCATTGGAAGTGATGGCGAACCATTGGCGACCTTCAAGAGTGCAACAGTTGCAGTAGATGCAGATTATTTCATAGCTATCAACATTGTATTTGAGAACACTGCATCACCACGTATTGGATCGAAGGATGATCAAGCTGTTGCTCTTCGCGTCTCTGGAAACAAATGTGCTTTTTACAATAGCGACTTCTATGGATTTCAAGACACGTTGTACGATCATAAAGGCCTCCACTACTTCAAAGGTTGCAAAATTCAAGGCACCATTGATTTTATCTTTGGAAATGGGAGGTCCCTTTACCAGGGCTGCACTATAAATTCCATAGCGCAAAATGTAAGCTTTATCACAGCTCAAAAGCGCTCAAGTTTGACAACTGATGATAGTGGATTTTCAATATTAAATAGCAAAGTAATAGGGAGTGGTCAAGTTTATTTGGGAAGACCATGGGGAGATTACTCGAGAGTAATTTTCTCTTATACCTACATGGACAATCTTGTTCTCCCTCAAGGATGGGTTGACACTATGGACGACGGTGACCACCACTTGAGCGTATTCTACGCAGAATATAAGTGTACTGGACCTGGATCCAATTTTGCTGGAAGACTTCCATGGATACAGAGATTGTCAGACAAAGATGCCCAAGAATTTATCGGGGTCCATTTCATTTATGGGGAGACTTGGCTCATTACCAGTGGTGGTGCTCGGACCCTGGTGTTGAATGAAAGTTTGGAGAATGTATCTCATTCATTGGTAAGTGGTTAA 1221 0.4226 MAMLLFFIIVISAAGDSYSSSPPPYEVKTLEGQGVPLDQAESNLPKIKAEVQNSQDFQIIFGTGPDIEQSLDWKLRQAENDKVTINVNPNGSGDFMTITEAINSIPAPNSRRVVVFIAPGLYREKIVIPRDLDFITFLGDATKKPIITGNDRSSTIGSDGEPLATFKSATVAVDADYFIAINIVFENTASPRIGSKDDQAVALRVSGNKCAFYNSDFYGFQDTLYDHKGLHYFKGCKIQGTIDFIFGNGRSLYQGCTINSIAQNVSFITAQKRSSLTTDDSGFSILNSKVIGSGQVYLGRPWGDYSRVIFSYTYMDNLVLPQGWVDTMDDGDHHLSVFYAEYKCTGPGSNFAGRLPWIQRLSDKDAQEFIGVHFIYGETWLITSGGARTLVLNESLENVSHSLVSG* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0371 406 SUPERFAMILY Pectin lyase-like 83 381 IPR011050 -
Tpr5g0371 406 Pfam Pectinesterase 85 377 IPR000070 GO:0030599|GO:0042545
Tpr5g0371 406 PANTHER PECTINESTERASE 58 382 - -
Tpr5g0371 406 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 58 382 - -
Tpr5g0371 406 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Tpr5g0371 406 Gene3D - 79 387 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0371 Tpr-Chr5 5657156 5668975 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0371 36 382 Carbohydrate Esterase AT1G69940 40.857 6.79e-86 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0371 K01051 - pvy:116132618 407.142