Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0366 ATGAAGTGGGGTCAGGTTAAGACACTTGAGGGACAAGGAGTGCCTTTAGATCAAGCTGAAGCAATAACTGCTGCTGCCATAACTAATCAGTCATTGGTACCAAAAGAAGAAATGCAAGCTGAATCCAAAATCAAAGCAGAAGTGCAGAACTCACAGGACCTCCAAATAATATTCGGCACCGGCCCTGACATCGGACAAAGTCAGGGTAATATTCAAATAGATTATAAGCTGAGGCAAGCGGAGAATAACAAGGTGACTATTAATGTTAACCCAAATGGTAGTGGTGATTTCATGACCATTACTGAAGCTATCAACAGCATTCCAGCACCCAACAGCAGAAGAGTAGTTGTTTTCATTGCGCCCGGTCTTTACAGGGAGAAAATTGTGATCCCTCGAGATTTGGATTTCATAACATTCTTAGGGGATGCAACGAAGAAACCAATTATTACCGGAAATGATAGATCATCTACCATTGGAAGTGATGGCGAACCATTGGCGACGTTCAAGAGTGCAACAGTTGCAGTAGATGCAGACTATTTCATAGCTATCAACATTGTATTTGAGAACACTGCATCACCACGTATTGGATCGAAGGATGATCAAGCTGTTGCTCTTCGCGTCTCTGGAAACAAATGTGCTTTTTACAATAGCGACTTCTATGGATTTCAAGACACGTTGTACGATCATAAAGGCCTCCACTACTTCAAAGGTTGCAAAATTCAAGGCACCATTGATTTTATCTTTGGAAATGGGAGGTCCCTTTACCAGGGCTGCACTATAAATTCCATAGCGCAAAATGTAAGCTTTATCACAGCTCAAAAGCGCTCAAGTTTGACAACTGATGATAGTGGATTTTCAATATTAAAAAGCAAAGTAATAGGGAGTGGTAAAGTTTATTTGGGAAGACCATGGGGAGATTACTCGAGAGTAATTTTCTCTTATACCTACATGGACAGTCTTGTTCTCCCTCAAGGATGGGTTGACACTATGGACGACGGTGACCACCACTTGAGCGTATTCTACGCAGAATATAAGTGTACTGGACCTGGATCCAATTTTGCTGGAAGACTTCCATGGATACAGAGATTGTCAGACAAAGATGCCCAAGAATTTATCGGGGTCCATTTCATTTATGGGGAGACTTGGCTCATTACCAGTGGTGGTGCTCGGACCCTGGTCCAAGGGAATAGAGTGAGTGGAAATGATGAAGAAAAAGAAGAAGGATTTGGAACCACATTGCAAGATTACAAATGCTCAAAATTAGGCATGACAACAGAACATGCGGGTACTCGCCTGAACCCACCCCGAGTTTGA 1314 0.4247 MKWGQVKTLEGQGVPLDQAEAITAAAITNQSLVPKEEMQAESKIKAEVQNSQDLQIIFGTGPDIGQSQGNIQIDYKLRQAENNKVTINVNPNGSGDFMTITEAINSIPAPNSRRVVVFIAPGLYREKIVIPRDLDFITFLGDATKKPIITGNDRSSTIGSDGEPLATFKSATVAVDADYFIAINIVFENTASPRIGSKDDQAVALRVSGNKCAFYNSDFYGFQDTLYDHKGLHYFKGCKIQGTIDFIFGNGRSLYQGCTINSIAQNVSFITAQKRSSLTTDDSGFSILKSKVIGSGKVYLGRPWGDYSRVIFSYTYMDSLVLPQGWVDTMDDGDHHLSVFYAEYKCTGPGSNFAGRLPWIQRLSDKDAQEFIGVHFIYGETWLITSGGARTLVQGNRVSGNDEEKEEGFGTTLQDYKCSKLGMTTEHAGTRLNPPRV* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0366 437 Gene3D - 80 389 IPR012334 -
Tpr5g0366 437 ProSitePatterns Pectinesterase signature 2. 240 249 IPR033131 -
Tpr5g0366 437 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 46 384 - -
Tpr5g0366 437 SUPERFAMILY Pectin lyase-like 84 383 IPR011050 -
Tpr5g0366 437 Pfam Pectinesterase 87 379 IPR000070 GO:0030599|GO:0042545
Tpr5g0366 437 PANTHER PECTINESTERASE 46 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0366 Tpr-Chr5 5500408 5511317 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0366 61 384 Carbohydrate Esterase AT1G69940 42.638 7.62e-85 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0366 K01051 - pvy:116132618 407.527