Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0356 ATGAAGTGGGGTCAGGTTAAGACACTTGAGGGACAAGGAGTGCCTTTAAATCAAGCTGAAGTGCAGAACTCACAGGACCTCCAAATAATATTCGGCACCGGCCCTGACATCGGACAAAGTCAGGGTAATATTCAAATAGATTATAAGCTGAGGCAAGCGGAGAATAACAAGGTGACTATTAATGTTAACCCAAATGGTAGTGGTGATTTCATGACCATTACTGAAGCTATCAACAGCATTCCAGCACCCAACAGCAGAAGAGTAGTTGTTTTCATTGCGCCCGGTCTTTACAGGGAGAAAATTGTGATCCCTCGAGATTTGGATTTCATAACATTCTTAGGGGATGCAACGAAGAAACCAATTATTACCGGAAATGATAGATCATCTACCATTGGAAGTGATGGCGAACCATTGGCGACGTTCAAGAGTGCAACAGTTGCAGTAGATGCAGACTATTTCATAGCTATCAACATTGTATTTGAGAACACTGCATCACCACGTATTGGATCGAAGGATGATCAAGCTGTTGCTCTTCGCGTCTCTGGAAACAAATGTGCTTTTTACAATAGCGACTTCTATGGATTTCAAGACACGTTGTACGATCATAAAGGCCTCCACTACTTCAAAGGTTGCAAAATTCAAGGCACCATTGATTTTATCTTTGGAAATGGGAGGTCCCTTTACCAGGGCTGCACTATAAATTCCATAGCGCAAAATGTAGGCTTTATCACAGCTCAAAAGCGCTCAAGTTTGACAACTGATGATAGTGGATTTTCAATATTAAATAGCAAAGTAATAGGGAGTGGTCAAGTTTATTTGGGAAGACCATGGGGAGATTACTCGAGAGTAATTTTCTCTTATACCTACATGGACAATCTTGTTCTCCCTCAAGGATGGGTTGACACTATGGACGACGGTGACCACCACTTGAGCGTATTCTACGCAGAATATAAGTGTACTGGACCTGGATCCAATTTTGCTGGAAGACTTCCATGGATACAGAGATTGTCAGACAAAGATGCCCAAGAATTTATCGGGGTCCATTTCATTTATGGGGAGACTTGGCTCATTACCAGTGGTGGTGCTCGGACCCTGGTCCAAGGGAATAGAGTGAGTGGAAATGATGAAGAAAAAGAAGAAGGATTTGGAACCACATTGCAAGATTACAAATGCTCAAAATTAGGCATGACAACAGAACATGCGGGTACTCGCCTGAACCCACCCTGA 1227 0.4271 MKWGQVKTLEGQGVPLNQAEVQNSQDLQIIFGTGPDIGQSQGNIQIDYKLRQAENNKVTINVNPNGSGDFMTITEAINSIPAPNSRRVVVFIAPGLYREKIVIPRDLDFITFLGDATKKPIITGNDRSSTIGSDGEPLATFKSATVAVDADYFIAINIVFENTASPRIGSKDDQAVALRVSGNKCAFYNSDFYGFQDTLYDHKGLHYFKGCKIQGTIDFIFGNGRSLYQGCTINSIAQNVGFITAQKRSSLTTDDSGFSILNSKVIGSGQVYLGRPWGDYSRVIFSYTYMDNLVLPQGWVDTMDDGDHHLSVFYAEYKCTGPGSNFAGRLPWIQRLSDKDAQEFIGVHFIYGETWLITSGGARTLVQGNRVSGNDEEKEEGFGTTLQDYKCSKLGMTTEHAGTRLNPP* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0356 408 Pfam Pectinesterase 60 352 IPR000070 GO:0030599|GO:0042545
Tpr5g0356 408 Gene3D - 53 362 IPR012334 -
Tpr5g0356 408 SUPERFAMILY Pectin lyase-like 57 356 IPR011050 -
Tpr5g0356 408 PANTHER PECTINESTERASE 44 357 - -
Tpr5g0356 408 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 44 357 - -
Tpr5g0356 408 ProSitePatterns Pectinesterase signature 2. 213 222 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0356 Tpr-Chr5 5385779 5396528 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0356 34 357 Carbohydrate Esterase AT1G69940 42.331 1.76e-84 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0356 K01051 - pvy:116132618 408.297