Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0355 ATGGCAATGCTATTGGCAATTATTGTGATTTCTGCTGCTGCAGATAGTTACTCTTCTTCTCCACCACCTTATGAACCACCTCCAATAGTTGGAAGGGCTTCAAATACTCTTGAGGTTAAGACACTTGAGGGACAAGGAGTGCCTTTAGATCAAGCTGAATCCAACCTGCCCAAAATCAAAGCAGAAGTGCAGAAGTCACAGCTTGATTTGAAGCTGAGACAAGCGGAGAGTAACAATGTGACTATTAATGTTAACCCAAATGGTGGTGGTGGTGATTTCAAGACCATTACTGAAGCTATCAACAACATTCCAGCACCCAACAGCAGAAGAGTAGTTGTTTTCATTGCGCCCGGTCTTTACAGGGAGAAAATTGTGATCCCTCAAGATTTGGATTTCATAACATTCTTAGGAGATGCAACGAAGAAACCAATTATTACCGGAAATGATAAAGCATCTACCATTGGAAGTGATGGCGAACCATTGACGACGTTCAAGAGTGCAACAGTTGCAGTGGATGCAGACTATTTCATAGCTATCAACATTGTATTTGAGAACACTGCATCACCACGTATTGGATCGAATAATGATCAAGCTGTTGCTCTTCGCGTCTCTGGAAACAAATGTGCTTTTTACAATAGCGACTTCTATGGATTTCAAGACACGTTATACGATCATAAAGGCCTCCACTACTTCAAAGGTTGCAAAATTCAAGGCACTGTTGATTTTATCTTTGGAAATGGGAGGTCCCTTTACCAGGGCTGCACTATAAATTCCATAGCGCAAAATGTAGGCTTTATCACAGCTCAAAAGCGCTCAAGTTTGACAACTGATGATAGTGGATTTTCAATATTAAATAGCAAAGTAATAGGGAGTGGTCAAGTTTATTTGGGAAGACCATGGGGAGATTACTCGAGAGTAATTTTCTCTTATACCTACATGGACAATCTTGTTCTCCCTCAAGGATGGGTTGACACTATAGACGACGGTGACCACCACTTGAGCGTATTCTACGCAGAATATAAGTGTACTGGACCTGGATCCAATTTTGCTGGAAGACTTCCATGGATACAGAGATTGTCAGACAAAGATGCCCAAGAATTTATCGGGGTTCATTTCATTTATGGGGAGACTTGGCTCATTACCAGTGGTGGTGCTCGGACCCTGATCAAAGCACAATCGAGCCAGGATCGATTAAGGTCTAGATCGGATTGCAGTAGAGTAGTGCTTGACGGCGGAAGAAGACTGCTATAG 1251 0.4229 MAMLLAIIVISAAADSYSSSPPPYEPPPIVGRASNTLEVKTLEGQGVPLDQAESNLPKIKAEVQKSQLDLKLRQAESNNVTINVNPNGGGGDFKTITEAINNIPAPNSRRVVVFIAPGLYREKIVIPQDLDFITFLGDATKKPIITGNDKASTIGSDGEPLTTFKSATVAVDADYFIAINIVFENTASPRIGSNNDQAVALRVSGNKCAFYNSDFYGFQDTLYDHKGLHYFKGCKIQGTVDFIFGNGRSLYQGCTINSIAQNVGFITAQKRSSLTTDDSGFSILNSKVIGSGQVYLGRPWGDYSRVIFSYTYMDNLVLPQGWVDTIDDGDHHLSVFYAEYKCTGPGSNFAGRLPWIQRLSDKDAQEFIGVHFIYGETWLITSGGARTLIKAQSSQDRLRSRSDCSRVVLDGGRRLL* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0355 416 ProSitePatterns Pectinesterase signature 2. 236 245 IPR033131 -
Tpr5g0355 416 Pfam Pectinesterase 88 375 IPR000070 GO:0030599|GO:0042545
Tpr5g0355 416 Coils Coil 49 78 - -
Tpr5g0355 416 Gene3D - 76 385 IPR012334 -
Tpr5g0355 416 PANTHER PECTINESTERASE 51 380 - -
Tpr5g0355 416 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 51 380 - -
Tpr5g0355 416 SUPERFAMILY Pectin lyase-like 80 379 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0355 Tpr-Chr5 5361847 5366912 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0355 64 380 Carbohydrate Esterase AT1G69940 42.320 2.32e-85 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0355 K01051 - pvy:116132618 400.979