Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0354 ATGGAAAAGGAATCTATGAAAAAGTGTTGGAGAAAAGAAGTAGATGAAAATCTTCAAAGATTACACTCTCTCTTGTTCGGCGTTGAACGTGCCCTAGATCAACAGAATTGCGATTTCTCTACCGCTTATATTCTCTCTCTTCGTCTCATCGGTTTCATTGATTCTCGTTCTCAATCAGAAATCGATCAAGCTTTTCTTCAACAGACTCGTCGTCAAGCTTTGACCTATCTTCATACTGCTAAACAATCTCTCACTCCTCTCATTGATCGCCAAGCTTTTGAGCAAGTAAAGAGGTCTCCAGGACCCATTTTTAGGTCAACAGGAGATATTGACATTGACAAGATACGGAATTCTAAATACTTTCAAGCTCTTCTTAAGCCATCTAAAGAAAAAGATTGCAATCAATTGGTAAATGTTGATCAACTGGGGAAGCAAAACAATACAGGCAAAGAAGCATCAAAGGAAGTGGTGCAAACAAAGTTAACATCAATATATGGGAAAAACAGCTTGAGGACTAGTAATGGTTCCAAAAGTTTTTTTAACTTGAAAAATAACAATTCTGAGGACTGTATAATTATTGGAAGGCCTCAATCACATGGCATCCATACAAAGAGTCCTGTTGTCTCTTCTGTTTTTGAAGTCGAAGGAGAAGGAATAGCTCGTGGAAACACGTTTCCGACAAAACGTGCACACGTGGAAAATACTAGCCCCAGAGTTGGTTATGTCAAGTCACCTTCAATCAAGGAGGAAGTTAATCCTGATGTTGCGGGCAATGGGTTTGTTACTGCCAGAGCAAAGTTGGAAATGGATGTAAAGCAAAAGCAGGGTGCAATTGGTTCACCCAGTGCACCTGTCTCACCACAATGCGACAACAATCCTGCCAACAGGCTATATGGTGGGAGATCATATGGTGTTTCACGACGTGGCATCCGTGGTAATTTTGTCCCCCCTATTAAATCCAATGGGAGCAATACTGGAAATATGACTTCCCGAATTGCTGGCAACAAAAGTGGTGATTCTTTAGATGAGTCTACAAAGAAATGTTTGGAAATGCTGTATGGTCCTGACGGTGAACTTCCTGAGAAACTAAGAAATTTAGAACCTCGCCTCATTGAACATGTTAGTAACGAGATTATGGATAAAGATCCCAATGTCCACTGGGATGACATTGCTGGATTGGGCCATGCCAAACGTTGTGTCAGTGAGATGGTCATATTACCTCTGCAACGTCCTGACTTATTTATGGGCTGCCGTTCTCCTGGGAGAGGTTTGCTTCTATTTGGTCCACCAGGAACTGGTAAAACAATGGTAGGAAAAGCCATAGCTGGGGATGCAAAGGCAACCTTCTTTTACATATCTGCAAGCTCGTTGACTAGCAAATGGATTGGTGAAGGTGAAAAGCTAGTAAGAGCCCTCTTTGGAGTGGCCAGTTGTCGTCAGCCAGCAGTAATTTTTGTTGATGAAATAGATTCGCTCTTGTCTCAGCGTAAGTCAGATGGTGAGCATGAAGCAAGCAGAAGGCTAAAGACACAGTTTCTTATTGAAATGGAAGGTTTCGACGGTGGTAACGACCAAATTCTGCTTATAGGTGCAACAAATCGTCCTCAAGAGCTTGATGAAGCAGCACGGAGGAGACTTACCAAAAGACTTTATATTCCCCTACCATCCTCAGAGGCAAGAGCTTGGATTGCACGTAGCCTTTTAGAGAAGGACGGATTATTCAACCTATCAAATGAGGAAATGGATGTTATATGCAACTTAACAGATGGTTATTCTGGATCAGACATGAAAAACTTAGTGAAGGATGCTTCTATGGGTCCCCTGAGAGAGAAAATAAGACAAGGCGTAAATATTGTAGAGTTGAAGAAGGAGGATATGAGGCCAGTAACTCTTCAGGACTTCAAAGATTCCCTACATGAGGTGAGACCTTCTGTTTCACCTGATGAACTTGGCACTTATGAGCAATGGAACAAGAAATTTGGAAGCATGTCAGTTTAG 1998 0.4179 MEKESMKKCWRKEVDENLQRLHSLLFGVERALDQQNCDFSTAYILSLRLIGFIDSRSQSEIDQAFLQQTRRQALTYLHTAKQSLTPLIDRQAFEQVKRSPGPIFRSTGDIDIDKIRNSKYFQALLKPSKEKDCNQLVNVDQLGKQNNTGKEASKEVVQTKLTSIYGKNSLRTSNGSKSFFNLKNNNSEDCIIIGRPQSHGIHTKSPVVSSVFEVEGEGIARGNTFPTKRAHVENTSPRVGYVKSPSIKEEVNPDVAGNGFVTARAKLEMDVKQKQGAIGSPSAPVSPQCDNNPANRLYGGRSYGVSRRGIRGNFVPPIKSNGSNTGNMTSRIAGNKSGDSLDESTKKCLEMLYGPDGELPEKLRNLEPRLIEHVSNEIMDKDPNVHWDDIAGLGHAKRCVSEMVILPLQRPDLFMGCRSPGRGLLLFGPPGTGKTMVGKAIAGDAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHEASRRLKTQFLIEMEGFDGGNDQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIARSLLEKDGLFNLSNEEMDVICNLTDGYSGSDMKNLVKDASMGPLREKIRQGVNIVELKKEDMRPVTLQDFKDSLHEVRPSVSPDELGTYEQWNKKFGSMSV* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0354 665 Pfam Vps4 C terminal oligomerisation domain 626 661 IPR015415 -
Tpr5g0354 665 PANTHER AAA DOMAIN-CONTAINING 94 663 - -
Tpr5g0354 665 ProSitePatterns AAA-protein family signature. 526 545 IPR003960 GO:0005524|GO:0016887
Tpr5g0354 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 660 IPR027417 -
Tpr5g0354 665 Pfam ATPase family associated with various cellular activities (AAA) 424 554 IPR003959 GO:0005524|GO:0016887
Tpr5g0354 665 PANTHER FIDGETIN-LIKE PROTEIN 1 94 663 - -
Tpr5g0354 665 SMART AAA_5 420 556 IPR003593 -
Tpr5g0354 665 Gene3D - 383 657 IPR027417 -
Tpr5g0354 665 Gene3D - 555 641 - -
Tpr5g0354 665 CDD AAA 417 554 - -
Tpr5g0354 665 Pfam AAA+ lid domain 586 616 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0354 Tpr-Chr5 5332537 5341394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0354 338 660 Calmodulin-binding Proteins AT3G56690 30.030 9.73e-40 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0354 K22766 - gmx:100776024 1017.68