Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0332 ATGGCTGGAGTTATTCAACAGTTATTGAGGAGGAAACTCCAGTCTCATTCTCTGAGTCCTTCTGTATCATCCATTGTCTCAAAGAAAGACGGTCCTGGCTCTACCGGCAGCAGCTCCTTAAGAGCCCTTGCTTTAATAGGAGCTGGTGTCTCAGGTCTTTTGGGTTTTGCAACAACAGCATCAGCTGATGAAGCCGAGCACGGCCTTGCATCTCCACACTATCCATGGCCTCACGAGGGCATCCTCAGTTCATATGATCATGCTTCGATTCGTCGTGGGCATCAAGTTTATACCCAAGTCTGTGCTTCCTGCCATTCTATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCTTACACAGAAGAAGAGGTAAAGGCTATGGCTGCTGAGATTGAGGTGGAAGATGGCCCTAATGATGAGGGCGAGATGTTTACACGCCCTGGTAAACTCAGTGATCGCTTTCCTCAGCCATATGCAAATGAATCAGCTGCTAGGTTTGCTAATGGAGGAGCCTATCCTCCGGATCTAAGTCTTATTACCAAAGCTCGTCACAATGGTCAGAACTATGTGTTTGCCCTCCTAACCGGTTATCGTGACCCCCCTGCTGGAGTTTCGATCAGAGAAGGATTGCATTACAATCCTTATTTTCCTGGTGGAGCCATTGCCATGCCTAAGATGCTTAATGATGGCGCTCTTGAGTATGAAGATGGTACCCCGGCTACAGAAGCTCAGATGGGGAAAGATGTTGTGTCATTTTTGTCTTGGGCAGCAGAACCCGAGATGGAAGAGCGAAAACTGATGGGATTTAAATGGATATTTGTACTATCATTGGCATTACTTCAAGCTGCGTATTATCGTCGTCTAAGGTGGTCTGTTCTTAAGTCTCGCAAGTTGGTTCTTGATGTTGTCAACTAA 918 0.4641 MAGVIQQLLRRKLQSHSLSPSVSSIVSKKDGPGSTGSSSLRALALIGAGVSGLLGFATTASADEAEHGLASPHYPWPHEGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVEDGPNDEGEMFTRPGKLSDRFPQPYANESAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGALEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0332 305 PANTHER CYTOCHROME C1 12 305 IPR002326 GO:0009055|GO:0020037
Tpr5g0332 305 Pfam Cytochrome C1 family 76 292 IPR002326 GO:0009055|GO:0020037
Tpr5g0332 305 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 12 305 - -
Tpr5g0332 305 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 260 304 IPR021157 -
Tpr5g0332 305 Gene3D - 65 260 IPR036909 GO:0009055|GO:0020037
Tpr5g0332 305 PRINTS Cytochrome C1 signature 74 93 IPR002326 GO:0009055|GO:0020037
Tpr5g0332 305 PRINTS Cytochrome C1 signature 94 113 IPR002326 GO:0009055|GO:0020037
Tpr5g0332 305 PRINTS Cytochrome C1 signature 139 159 IPR002326 GO:0009055|GO:0020037
Tpr5g0332 305 PRINTS Cytochrome C1 signature 172 196 IPR002326 GO:0009055|GO:0020037
Tpr5g0332 305 PRINTS Cytochrome C1 signature 210 221 IPR002326 GO:0009055|GO:0020037
Tpr5g0332 305 PRINTS Cytochrome C1 signature 221 240 IPR002326 GO:0009055|GO:0020037
Tpr5g0332 305 PRINTS Cytochrome C1 signature 241 260 IPR002326 GO:0009055|GO:0020037
Tpr5g0332 305 PRINTS Cytochrome C1 signature 260 275 IPR002326 GO:0009055|GO:0020037
Tpr5g0332 305 Gene3D - 261 304 - -
Tpr5g0332 305 ProSiteProfiles Cytochrome c family profile. 88 195 IPR009056 GO:0009055|GO:0020037
Tpr5g0332 305 SUPERFAMILY Cytochrome c 69 259 IPR036909 GO:0009055|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0332 Tpr-Chr5 5047977 5054007 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0332 3 305 Chloroplast and Mitochondria Gene Families AT3G27240 87.459 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0332 K00413 - gmx:100777056 543.117