Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0291 ATGCCTGTAATCACAGGACACATGAAATGGAGAAGACCCAGAAACAAATTAAGACACCCCAATTCAGAAACTGATCCAAATTCACAACTTTCTTCTTCTATAATCCAATCCACTTCTTGCAAATCCACAATCACCACTCTCTTTTCCACTTTCTCTAACAACACATCCAATGAAACCACACATGACAGTAACCAAAACAGAACAAAAAAGAACAATGGTAACTTTTCTGCAGCAACCTTCAGAGGACTCGGTTGCACAGCCGGTACATCACAACAGGTGTCTGTACCGGCTGTGATTCGATCCTCTGCAGATTGGGAAGGAAAAAAGAATAGAAAAAAGAAACATAGAAAGAGCAGCAATAAAACATGTCATGGTGTTGATGATGTGGATTTTCAGGATGTTTGGTGTGGACCAGGAATTGGGTTTTCATCTGATGTTGCTGATGTTGCTGATGTTTCTGTGGATTGTGTTGTGTCAAGAAAGAATGTTTCTTCAAGAGGAAAATTTGATAATGGGGAAAGAGTAACACATAGGGAGCGTTCATCTTATTTTGGAAGGAGAAATTTAAATCAAGAAAGTTTATCATTTTTGGATGATGATTCTGATGTGTTGACATCACGTCATGGATTAGAATCTTTTGGCAATAGTAGATTCTATAGAAATTCTTCACATGTTTCATCTGAGATAATGATAATTCAAGGAGCAAGATTAATGGGGGGACGATTAAATTCACGTGACCAATTTAGAGATTGGAGACTTGATGTTGATAATATGTCATATGAGCAATTGCTTGAGCTAGGTGAAAGAATTGGTTATGTGAAAACAGGACTTAAAGAAGATGAGATGAAACAGAACATAAAGAAAATTAAGCTTTTGATTTCAAATGATACAACAAAGCATCAAATAGACAAAAAGTGCACCATTTGTCAAGAGGAGTATGAATTAGATGATGAATTGGGGAGATTAAATTGTGAACATTGCTATCATTTTCAATGTATAAAACAATGGCTTGTGCTTAAAAACTTCTGTCCGGTATGTAAACATGAAGTCGCGGTTCGACACTGA 1065 0.3653 MPVITGHMKWRRPRNKLRHPNSETDPNSQLSSSIIQSTSCKSTITTLFSTFSNNTSNETTHDSNQNRTKKNNGNFSAATFRGLGCTAGTSQQVSVPAVIRSSADWEGKKNRKKKHRKSSNKTCHGVDDVDFQDVWCGPGIGFSSDVADVADVSVDCVVSRKNVSSRGKFDNGERVTHRERSSYFGRRNLNQESLSFLDDDSDVLTSRHGLESFGNSRFYRNSSHVSSEIMIIQGARLMGGRLNSRDQFRDWRLDVDNMSYEQLLELGERIGYVKTGLKEDEMKQNIKKIKLLISNDTTKHQIDKKCTICQEEYELDDELGRLNCEHCYHFQCIKQWLVLKNFCPVCKHEVAVRH* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0291 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 352 IPR013083 -
Tpr5g0291 354 MobiDBLite consensus disorder prediction 51 75 - -
Tpr5g0291 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 4 354 IPR045191 GO:0061630
Tpr5g0291 354 SUPERFAMILY RING/U-box 305 351 - -
Tpr5g0291 354 ProSiteProfiles Zinc finger RING-type profile. 306 347 IPR001841 -
Tpr5g0291 354 Pfam Ring finger domain 305 347 IPR001841 -
Tpr5g0291 354 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 4 354 - -
Tpr5g0291 354 MobiDBLite consensus disorder prediction 1 34 - -
Tpr5g0291 354 SMART ring_2 306 346 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0291 Tpr-Chr5 4350465 4355684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0291 4 261 C3H Transcription Factor Family AT1G73760 40.273 5.50e-43 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0291 - - gmx:100818517 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0268 3 3076955 3079969 Tpr5g0291 5 4350465 4355684 ECH
Tpr5g0291 5 4350465 4355684 Tpr5g0291 5 4350465 4355684 ECH