Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0273 ATGGGATCCCATAGTGAAGACAATGTTGAAAAGCTGCTTCAAGCCCAAACCCATGTATTCAATCACATTTTCAGTTTCATAAATTCAATGTCCCTTAAATGTGCAATTGAATTGTCCATACCAGATATCATACAAAACTATGGTGAACCCATCCCACTCTCACAACTCATTGCTAAATTACCAATCAACCCTTCTAAAACCGGCGACATTTATCGTTTAATGAGAGTTTTAACACATTCCGGTTTCTTCAATGTCACAAAAAATGATGTAGAAGTAATGTATGAGCTTAATGATGCATCTAGATTATTACTTAAGGACCATCCCTATAGTATGACATCTATGTTACATGTTATACTTGGTCCAATTATGAGTAAACCATGGTGTCAACTTTCTAATTGGTACAAAAATGATGACCCTTCACCTTTTCATACTGAAAATAATGGGATTGCTTTATGGGATTTTGCTGGCCATGACCCTAAATTCAATCATTTGTTTAATGAAGCTATGGCTTGTGAAACTAGAATGGCTTCTAGTGTTATGATGGGAAAGTTTAAAGGGGTGTTTGAGGGATTGGAATCATTGGTTGATGTTGGTGGAGGCATAGGAACAATTACTAAGGTTATTGCTAAGTCATTCCCAAACATTGCATGCATTGTGTTTGATCTCCCACATGTTGTTGATGGCTTGGAAGCAAGTGAAAACTTGAAATATGTTGGAGGTGACATGTTTGAGGCTATTCCTCCTACTCAATCAATTTTACTCAAGGGTGTATTACATGATTGGAATGATGAGGAATGTTTAAATATTCTAAAGAAATGCAAGGAAGCAATAGAGAGCAAAGGAAAAGAAGGGAAAGTGATAATCATAGATGCAGTGGTGGGGAATGAGAAGGAAGACAAAGAATCATTTGCAGCACAATTGTTCTATGATTTGGAGATGATGGTTTTAGTCAATGGAAAAGAGAGAAATGAGAAAGAATGGTCTAAGCTGTTTTTCTCCGCTGGTTTTAGTAACTACAAGATAACTCATGGTCTTGGTTTTAAGTCTCTCATTGAAGTTTTTCCTTAG 1068 0.3633 MGSHSEDNVEKLLQAQTHVFNHIFSFINSMSLKCAIELSIPDIIQNYGEPIPLSQLIAKLPINPSKTGDIYRLMRVLTHSGFFNVTKNDVEVMYELNDASRLLLKDHPYSMTSMLHVILGPIMSKPWCQLSNWYKNDDPSPFHTENNGIALWDFAGHDPKFNHLFNEAMACETRMASSVMMGKFKGVFEGLESLVDVGGGIGTITKVIAKSFPNIACIVFDLPHVVDGLEASENLKYVGGDMFEAIPPTQSILLKGVLHDWNDEECLNILKKCKEAIESKGKEGKVIIIDAVVGNEKEDKESFAAQLFYDLEMMVLVNGKERNEKEWSKLFFSAGFSNYKITHGLGFKSLIEVFP* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0273 355 PANTHER O-METHYLTRANSFERASE 7 355 IPR016461 GO:0008168
Tpr5g0273 355 PIRSF O-mtase 1 355 IPR016461 GO:0008168
Tpr5g0273 355 Pfam O-methyltransferase domain 127 337 IPR001077 GO:0008171
Tpr5g0273 355 SUPERFAMILY "Winged helix" DNA-binding domain 10 108 IPR036390 -
Tpr5g0273 355 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 355 IPR016461 GO:0008168
Tpr5g0273 355 Gene3D - 2 103 IPR036388 -
Tpr5g0273 355 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Tpr5g0273 355 PANTHER ORCINOL O-METHYLTRANSFERASE 7 355 - -
Tpr5g0273 355 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 353 IPR029063 -
Tpr5g0273 355 Gene3D Vaccinia Virus protein VP39 104 355 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0273 Tpr-Chr5 3950581 3952752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0273 30 354 Monolignol Biosynthesis Gene Families AT5G54160 31.832 3.74e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0273 - K16040 gmx:100807238 472.626