Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0272 ATGCATATGATTGTAGCTAGTCACTCTAGCTGGAACTGGAAAAGGAAAGTCATTATAGATGTTGGAATTGTAGCAACGATAGCATTGTTGATGTGGTTCATAATTTGTAGTTTCAGAGGCAAGTTATTAATACCACAAGTCAAATTTTGGTTTAGGACAGATAAATATGATAAAAATATTGAAGCATTTTTAAAAGATCATGAAGCTCTACAACAGAAAAGATTTAGATTTTCAGAAATTAAAAAAATGACCAATTCATTCAAGGATAAACTTGGTCAAGGGGGTTTTGGTGTTGTGTACAAAGGAAAGTTAAATGATTGTCCTGTGGCTGTAAAGATATTGAGTAGATCCAAAGGAAATGGTGAAGAATTTATTAATGAGGTTGCTAGTATTACTAGAACCTCCCATGTCAATGTTGTCACCCTTCTTGGATTTTGTTTTGAAGGCGGCGAAAAAGCTCTCATATATGAATTTATGTCCAATGGTTCACTTGACAAATTCATTTACGATAAAGGATCCGAAACTAATGTATATTTAAGTTGGGATAATTTACATCAAATTGCAAAAGGAATAGCTTGTGGGCTAGAGTACTTGCATAAGGGATGCACCACACGAATTTTACATTTTGACATAAAACCACATAACATTCTTCTGGATGATAATTTTTGCCCAAAGATTTCAGACTTTGGACTTGCAAAGCTTTGCCTCAGAAAAGAGAGCATTATTTCAATGTCCGATGCAAGAGGAACAATGGGGTATGCAGCTCCAGAATTATGGAATAGAAATTTCGGAGGTGTTTCGTACAAGTCTGATGTTTATAGTTATGGAATGATGTTGTTGGAAATGGTTGGAGGGAGGAAAAACATTAATCCAGATGCAAGTCGCACAAGTGAGCTATACTTTCCTCATTGGGTATATAGTAGGCTTGAGCTTGGTAGTGATTTGAGACCTGATGGAATAATGGATACAGAAGAAGATGAGATTGCAAGGAGAATGATCATTGTAGGTTTGTGGTGTATTCAAACATTTCCTAATGATAGGCCTACAATGAGTAAAGTTATTGAAATGCTAGAAGTTAGCATGAATTCGTTGAAAATACCACCAAAACCATTGCTTTCATCTCCTATTAGATCAGTACCAGAGTCTCCCAAATCTTAA 1158 0.3541 MHMIVASHSSWNWKRKVIIDVGIVATIALLMWFIICSFRGKLLIPQVKFWFRTDKYDKNIEAFLKDHEALQQKRFRFSEIKKMTNSFKDKLGQGGFGVVYKGKLNDCPVAVKILSRSKGNGEEFINEVASITRTSHVNVVTLLGFCFEGGEKALIYEFMSNGSLDKFIYDKGSETNVYLSWDNLHQIAKGIACGLEYLHKGCTTRILHFDIKPHNILLDDNFCPKISDFGLAKLCLRKESIISMSDARGTMGYAAPELWNRNFGGVSYKSDVYSYGMMLLEMVGGRKNINPDASRTSELYFPHWVYSRLELGSDLRPDGIMDTEEDEIARRMIIVGLWCIQTFPNDRPTMSKVIEMLEVSMNSLKIPPKPLLSSPIRSVPESPKS* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0272 385 Gene3D Transferase(Phosphotransferase) domain 1 159 366 - -
Tpr5g0272 385 ProSiteProfiles Protein kinase domain profile. 85 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g0272 385 Gene3D Phosphorylase Kinase; domain 1 58 158 - -
Tpr5g0272 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Tpr5g0272 385 ProSitePatterns Protein kinases ATP-binding region signature. 91 112 IPR017441 GO:0005524
Tpr5g0272 385 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 11 385 - -
Tpr5g0272 385 SUPERFAMILY Protein kinase-like (PK-like) 70 359 IPR011009 -
Tpr5g0272 385 Pfam Protein kinase domain 88 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g0272 385 PANTHER RUST RESISTANCE KINASE LR10-RELATED 11 385 IPR045874 GO:0004672
Tpr5g0272 385 SMART serkin_6 85 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0272 Tpr-Chr5 3939550 3940851 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0272 12 382 Receptor kinase-like Gene Family AT5G38280 52.520 1.25e-126 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr5g0272 Pkinase 6.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0272 - - gmx:100799268 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0272 5 3939550 3940851 Tpr5g0272 5 3939550 3940851 ECH