Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0251 ATGTCTAATAGTAAAGATGATAATGAACTTAGAAAGGGACCATGGACTCTTGAAGAGGATGATCTTCTCATTAAACACATTGCTAATCATGGTGAAGGGAGATGGAATTTCTTGGCTATGAGTTCAGGATTAAGGAGAACAGGAAAGAGCTGCAGATTAAGATGGCTAAATTATTTAAATCCAAATATAAAGAGAGGAAACTTAACTTTAGAAGAGAAACTTTTGATTTTTGAACTTCACTCGAAGTGGGGCAACAAGTGGTCAAAGATTGCACAAAACTTGCCAGGAAGAACGGACAATGAAATAAAGAACTATTGGAGAACTCGGATTCAAAAACAAGCAAGACATTTGAAAGTTGACACAAATGGAAGAGGATTTCTAGAAATTGTTAATCCTTTAAGAATAACAAGTCATCAAAAATCAAAAGAATCATTCTCTTCAACCATCCAAGATCAATCAATTCCTTTGCCACTTGATGGTGTTTCTCATTATTCATCAATTGAGACAATACAAACACTAGTCCCTTATTTGGATTATCATGAGATAAACTCAGATTCTGAGCATAACAATGGTTTATGCATGTCCTCTTCAGAATCAACAAATATGCCAAATATAACTCAGCCTTTGGAATACACTACTAGTCAATTTCAGTCCTTGGATAATAATGAGTATGATATATGTTCATATGATGGTTACCACATAAATAACAATTCCTTAAACTTGAAAAGCACAATGATTGCTGAGGATGTGGAATACCAAATGGGGGATTTCAATATATTAGAAAGCAATTGGCTAGACAAAGAATTTGCATGTACTAGCACATGGGACTTGAATGAATTGTTGCAAGTTAGGAGTACTCAAATGTGA 867 0.3426 MSNSKDDNELRKGPWTLEEDDLLIKHIANHGEGRWNFLAMSSGLRRTGKSCRLRWLNYLNPNIKRGNLTLEEKLLIFELHSKWGNKWSKIAQNLPGRTDNEIKNYWRTRIQKQARHLKVDTNGRGFLEIVNPLRITSHQKSKESFSSTIQDQSIPLPLDGVSHYSSIETIQTLVPYLDYHEINSDSEHNNGLCMSSSESTNMPNITQPLEYTTSQFQSLDNNEYDICSYDGYHINNNSLNLKSTMIAEDVEYQMGDFNILESNWLDKEFACTSTWDLNELLQVRSTQM* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0251 288 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Tpr5g0251 288 SMART sant 11 61 IPR001005 -
Tpr5g0251 288 SMART sant 64 112 IPR001005 -
Tpr5g0251 288 Gene3D - 12 64 - -
Tpr5g0251 288 PANTHER OS01G0128000 PROTEIN 4 279 - -
Tpr5g0251 288 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Tpr5g0251 288 CDD SANT 69 108 IPR001005 -
Tpr5g0251 288 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 279 IPR044676 GO:0003700|GO:0006355|GO:0043565
Tpr5g0251 288 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Tpr5g0251 288 CDD SANT 14 59 IPR001005 -
Tpr5g0251 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
Tpr5g0251 288 Gene3D - 68 126 - -
Tpr5g0251 288 Pfam Myb-like DNA-binding domain 65 108 IPR001005 -
Tpr5g0251 288 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Tpr5g0251 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 114 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0251 Tpr-Chr5 3645383 3647041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0251 7 195 MYB Transcription Factor Family AT1G68320 53.571 1.48e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr5g0251 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0251 K09422 - gmx:100804227 348.206