Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0249 ATGGCTGAATTCACAGAAAATTTTCAAAATATTATTAGACCCTCTTTTCCTTTTCTTGATTCTGATCAAAGTATGGAACTATTGAATCAATTCATGGAAAATTCTTCAAACATGAATATGATGCAAAATTTGATGCCTTTTTCTTGTGACAGCATCTTGGAACATCATCAACAACAACAGGAACATGAGTTGTTTCCAAGAAACTTGGAAGAAAATTTTCATGGTCTTGTTCATCATCATCATCATGTTAATAATCATAATCACAATGCAGTTCAAGTTTCATTTCCAAATTTTCAAGAAGAAAATAAAGTTCATCATGATGGAAAAAAGAGAAAAATGATGGATTTTCAAGAAACTAGTTCTGCAAATTCAACTCCTGCAGTTTCTGAGAGTGGAAGCAAAACCAAACATAGTGGTGGAAGAGGAAAAAGACTGAAAAGCTATGAAACAGAAGATCAAGAGAAAGCAAAGGAAGTTGTTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAGAAATTGAGGTGCTTGCAGAATATTGTTCCTGGATGTTACAAGACCATGGGAATGGCAGTAATGTTGGATGAAATCATAAACTATGTTCAGTCTTTGCAGCATCAAGTAGAGTTTCTTTCTTTGAAGCTTACTGCAGCAAGCACTTATTATGACTTCAATTCAGAGACAGATGATTTAGAAACAATGCAGAGAGCAAGGGCATCTGAGGCAAAAGAATTAGCAAGGTATAAGAGAGAAGAATATGGAGGAATTTCATGCTTTCAACCAACATGGCCCCTTTGA 840 0.3524 MAEFTENFQNIIRPSFPFLDSDQSMELLNQFMENSSNMNMMQNLMPFSCDSILEHHQQQQEHELFPRNLEENFHGLVHHHHHVNNHNHNAVQVSFPNFQEENKVHHDGKKRKMMDFQETSSANSTPAVSESGSKTKHSGGRGKRLKSYETEDQEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTYYDFNSETDDLETMQRARASEAKELARYKREEYGGISCFQPTWPL* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0249 279 Pfam Helix-loop-helix DNA-binding domain 172 219 IPR011598 GO:0046983
Tpr5g0249 279 MobiDBLite consensus disorder prediction 117 174 - -
Tpr5g0249 279 MobiDBLite consensus disorder prediction 117 135 - -
Tpr5g0249 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 235 IPR036638 GO:0046983
Tpr5g0249 279 MobiDBLite consensus disorder prediction 142 174 - -
Tpr5g0249 279 CDD bHLH_AtBPE_like 158 243 - -
Tpr5g0249 279 Coils Coil 245 265 - -
Tpr5g0249 279 Gene3D - 168 230 IPR036638 GO:0046983
Tpr5g0249 279 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 278 IPR024097 GO:0006355
Tpr5g0249 279 SMART finulus 174 224 IPR011598 GO:0046983
Tpr5g0249 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 218 IPR011598 GO:0046983
Tpr5g0249 279 PANTHER TRANSCRIPTION FACTOR BEE 1 2 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0249 Tpr-Chr5 3614748 3617075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0249 46 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 51.807 3.65e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr5g0249 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0249 - - gmx:100806942 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0249 5 3614748 3617075 Tpr5g0249 5 3614748 3617075 ECH