Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0243 ATGGAGGAAAATCTACCTCCTGGATTTAGGTTTCATCCAACAGATGAAGAACTCATAACACACTATCTTACAATGAAAATTTCTGATTCTTCATTCACATCAAAAGCTGTTGCAGTTGTTGATCTTAACAAGTCTGAACCTTGGGACCTCCCAGGCAAGGCTTCAATGGGGGAGAAGGAATGGTATTTTTTCAGCGTGAGAGATAGAAAATATCCAACTGGACTTCGAACAAATCGAGCCACTGAATCAGGGTATTGGAAAACCACTGGAAAAGATAAGGAAATATTTCGTGGTGGAGTTTTGGTAGGAATGAAGAAAACCCTAGTGTTTTATAAGGGTAGAGCTCCAAGGGGTGAGAAAAGTAATTGGGTCATGCATGAATATAGATTAGAAAACAAACACCACATTCGAACTTCAAAGGATGAATGGGTGGTTTGTAGGGTTTTCCAAAAAAGCATAGCAACAAAAAAACCACAACAAACATCATCATCCCAACCAGAATCTCCATGTGACACAGCCTCAATGGTAAATGAATTTGGTGATGTTGAACTTCCAAATCTAAATGGTTTTACAAATTCATCATCATCGTGTGGATTCACTAACATTATTTCAGGACAAACATTTAACACTAATCATGATCTCACTAATAATGTTAACACAAATATGAACTTAACAATGAATTGGCCATCTTCAAGTGAAATTCCATCTCTAAATTGGCCTTCTAACTTGCTTAATCCAAATAATATTTCTGTAAATTCATTGCTTCTAAAAGCATTACAACTTAGGAATTATCAACAACAAAGAGAAGTTGCAGCTACAAATCATTTTGTACCATACATGCCTCAACAAGGAGTTATATCTCATCACCTTGGAAATGACTTAAGTAATAATTCAAATGATTTAAGTGCTTCTTCTTCAAAAGTTTTAGAATGTATGCCACAACATCAACAAGAGCAACCATTCAATTTGGACTCAATTTGGTGA 984 0.3567 MEENLPPGFRFHPTDEELITHYLTMKISDSSFTSKAVAVVDLNKSEPWDLPGKASMGEKEWYFFSVRDRKYPTGLRTNRATESGYWKTTGKDKEIFRGGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKHHIRTSKDEWVVCRVFQKSIATKKPQQTSSSQPESPCDTASMVNEFGDVELPNLNGFTNSSSSCGFTNIISGQTFNTNHDLTNNVNTNMNLTMNWPSSSEIPSLNWPSNLLNPNNISVNSLLLKALQLRNYQQQREVAATNHFVPYMPQQGVISHHLGNDLSNNSNDLSASSSKVLECMPQHQQEQPFNLDSIW* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0243 327 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 264 - -
Tpr5g0243 327 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Tpr5g0243 327 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Tpr5g0243 327 Gene3D NAC domain 14 154 IPR036093 GO:0003677|GO:0006355
Tpr5g0243 327 PANTHER BNACNNG63190D PROTEIN 2 264 - -
Tpr5g0243 327 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0243 Tpr-Chr5 3519333 3522537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0243 1 327 NAC Transcription Factor Family AT3G18400 58.407 5.86e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr5g0243 NAM 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0243 - - gmx:100780030 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0243 5 3519333 3522537 Tpr5g0243 5 3519333 3522537 ECH