Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0195 ATGGGTAGAAAGTGCTCACATTGTGGAAACATAGGACATAATTCAAGGACTTGTAATTCTTTAAGAGGAAATAATAGTTTTGTTGGAGTTAGACTTTTTGGTGTTCAACTTGATTTATCATCTTCTTGTGTTTCCATGAAAAAGAGCTTTAGCATGGATTCTTTTCCTACTTCATCTTCTTCTCCTACTTCTTCCTTTTCTTCCTCAAGATTAAACATTGATGATAAAACCTCTATTGGTTATCTTTCAGATGGTCTTATAGTTCGAACACAAGAAAGGAAAAAAGGAGTTCCATGGACGGAAGAAGAACACAGAAAATTTCTTGTTGGACTTGAGAAGCTTGGAAAAGGAGATTGGAGAGGTATCTCTAGAAACTATGTGACTACAAGAACACCAACTCAAGTTGCAAGCCATGCTCAAAAGTACTTTATTCGACTTGCAACTTTAAATAAGAAGAAGAGACGTTCTAGCCTCTTTGACATGGTTGGTAGCGGCAAATCCAAATGTGAAGCTCATGAAAAGGATAATGCAACTTTGTCACTACTAATAACCTCACTTCAACAACAAACCAAATCAACTCATGAGATTGAAGAAGCTGAAGAAACAGAAGATGAAGTTGTGCCTGATTGGTTACATCCTCTAACAAAGTCTTTAAATATGACATTGGTGATACCAAATTCTTCAAATTCAACAACACCTGAGCTTGAGCTAAGTCTTGCAGTAATTCCTAAGTCAAATAAGACCATGGAACAACAAGATAAAACATCTAAGAGTTCATTTCTTAATGGGCCAATTAGTGTGACTTAA 807 0.3581 MGRKCSHCGNIGHNSRTCNSLRGNNSFVGVRLFGVQLDLSSSCVSMKKSFSMDSFPTSSSSPTSSFSSSRLNIDDKTSIGYLSDGLIVRTQERKKGVPWTEEEHRKFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLATLNKKKRRSSLFDMVGSGKSKCEAHEKDNATLSLLITSLQQQTKSTHEIEEAEETEDEVVPDWLHPLTKSLNMTLVIPNSSNSTTPELELSLAVIPKSNKTMEQQDKTSKSSFLNGPISVT* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0195 268 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE ISOFORM X1 1 258 - -
Tpr5g0195 268 Gene3D - 97 149 - -
Tpr5g0195 268 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 94 145 IPR006447 GO:0003677
Tpr5g0195 268 MobiDBLite consensus disorder prediction 245 268 - -
Tpr5g0195 268 ProSiteProfiles SANT domain profile. 99 147 IPR017884 -
Tpr5g0195 268 SMART sant 95 145 IPR001005 -
Tpr5g0195 268 SUPERFAMILY Homeodomain-like 92 147 IPR009057 -
Tpr5g0195 268 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Tpr5g0195 268 CDD SANT 98 143 IPR001005 -
Tpr5g0195 268 Pfam Myb-like DNA-binding domain 98 143 IPR001005 -
Tpr5g0195 268 PANTHER TRANSCRIPTION FACTOR KUA1 1 258 - -
Tpr5g0195 268 ProSiteProfiles Myb-like domain profile. 91 143 IPR001005 -
Tpr5g0195 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 147 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0195 Tpr-Chr5 2906184 2908606 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr5g0195 Myb_DNA-binding 6.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0195 - - gmx:778052 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0195 5 2906184 2908606 Tpr5g0195 5 2906184 2908606 ECH