Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0174 ATGGGAAGGTCTCCATGTTGTGACAAATCAAAAGTGAAAAGAGGGTCATGGTCTCATGAAGAAGATGTTATCCTCAGAAACTACCTTAACAAACATGGCTTAGCTGGTAATTGGATAACTCTCCCTCAGAAAGCAGGCCTAAATCGTTGCGGGAAGAGTTGTCGTCTTAGATGGTTAAACTATCTTAGGCCTCATATCAAGCTTGGAGGTTTCACTGAGGAAGAAGACAACATTATCTTCACTCTTTATAGCACCATTGGAAGCAGGTGGTCCTTAATAGCAGCTCAGCTACCAGGAAGAACAGATAATGATGTGAAGAATCATTGGAACACTAAACTAAAGAAAAGGTTTTTGGCACAAAACTCATCCACAAGCAACAATATTTACACTTTTAGCAACACTACTAGTACTGCTACTACAAGTTCTGACCACTTTTCAAGTACTTTGACTTTTCAACCTCAAGTTGAACAAACCTTTGTCTTTGATCCAAAACAGAACACAACTTGTTTTGACTCCTACAATGTTCTTGATTTGGATCAAACAACAATTAATAATATTAATTTACCAATGAAAATGGAATCAGAACCTTTTTATACTGGAAACATCTTGAGTAGTAGCTGTAGTACTACACCAACCACCAAGGAAATTTCAAGTGCACCTTTCTTAGAAGAACAAAAGAACAATCATAATCAATGGTTTGGATATGATCATGATGATGCATTTCTACATGAATTTGTTCTTGATGATTATTTGAATCATGGACCCTCATCTGGCTAA 777 0.3681 MGRSPCCDKSKVKRGSWSHEEDVILRNYLNKHGLAGNWITLPQKAGLNRCGKSCRLRWLNYLRPHIKLGGFTEEEDNIIFTLYSTIGSRWSLIAAQLPGRTDNDVKNHWNTKLKKRFLAQNSSTSNNIYTFSNTTSTATTSSDHFSSTLTFQPQVEQTFVFDPKQNTTCFDSYNVLDLDQTTINNINLPMKMESEPFYTGNILSSSCSTTPTTKEISSAPFLEEQKNNHNQWFGYDHDDAFLHEFVLDDYLNHGPSSG* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0174 258 CDD SANT 71 113 IPR001005 -
Tpr5g0174 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Tpr5g0174 258 SMART sant 13 64 IPR001005 -
Tpr5g0174 258 SMART sant 67 115 IPR001005 -
Tpr5g0174 258 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Tpr5g0174 258 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tpr5g0174 258 CDD SANT 16 62 IPR001005 -
Tpr5g0174 258 Gene3D - 6 68 - -
Tpr5g0174 258 Gene3D - 70 141 - -
Tpr5g0174 258 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Tpr5g0174 258 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Tpr5g0174 258 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Tpr5g0174 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tpr5g0174 258 PANTHER OS09G0431300 PROTEIN 1 191 - -
Tpr5g0174 258 PANTHER OS09G0431300 PROTEIN 1 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0174 Tpr-Chr5 2666533 2670236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0174 1 120 MYB Transcription Factor Family AT5G57620 73.333 6.91e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr5g0174 Myb_DNA-binding 3.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0174 K09422 - gmx:778160 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0174 5 2666533 2670236 Tpr5g0174 5 2666533 2670236 ECH