Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0171 ATGATGATCGGAGAACACCATCGATCAAATCCAACGGTTCATATTCCTCCATGGCCAAATCACGATGATCCAACGTCTGAAATTTACTCCTCTTATTTCCCTGACGATGGCAATGCCGGCGCCGGAGATTACTCTCCGTACTATCTCCGTGAAGCAATGGCTGCGCTACAGCGTTATCTTCCGTCAAACGAGTTCGACGCCGGAGACTGTGATTCTGATTCGGAATCTCCGGCGGATTCTCCGGTGGATGCTTTTACAGGCGATCATTTTCGTATGTACGAGTTCAAGATAAGAAGATGCTCACGTGGAAGATCACATGACTGGACGGAGTGTCCGTACGCACATCCCGGAGAGAAAGCACGCCGCCGTGATCCGAGAAAGTTTCATTACTCCGGTACGGCGTGTCCTGATTTTCGTAAAGGAAACTGTAAAAAAGGTGACGCGTGTGAATACGCGCACGGTGTTTTCGAGTGTTGGCTTCATCCAGCTCGTTACCGTACTCAGCCATGCAAAGACGGTACTAGCTGTCGCCGCCGTGTTTGTTTCTTCGCTCACACGCCGGAACAGATCCGTCTCAATGTTAACAGTCCAACTCCACGTAGTCTTAACTCGCCGGATTCATACGACGGTTCTCCGTTACGACAAATGGCTTTACCGTTACCTTTCATGTCTTCTCCCGTTTCGACAACTCCACCGGAGTCACCGTCGCCACCGATGTCTCCGATGGCTCAGTCGCTGAGTAAATCTCTCGGCTCGAGTTCAATCAACGAGATGGTAGCTTCTGTACGTAATCTGCAGCTTGGAAAATTGAAATCTATACCTTCTATGCCGGTTAATAGAAACATTGCACTCGGGCCGGGTTTCGGGTCACCCAGAGGTTCTGTGCTTCGACCCGGTTTTTGTAGTCTTCCAACTACGCCAACTCAAGTTACTGGACCGGGTTCGGGTCGGGTTGGATATTTTGATCTTTGGGATCAGAGTTGTGAGGAGGAACCTATTATGGAGAGAGTTGAATCTGGGAGAGATATAAGGGCTAAGATGTTTGAGAAATTAAGCAAAGAAAATTCATTGAAAAATTCGGATTCGGGTCAACCTGATGGTGCTCCAGATGTTGGGTGGATATCTGATTTGGTTAATTGA 1140 0.4851 MMIGEHHRSNPTVHIPPWPNHDDPTSEIYSSYFPDDGNAGAGDYSPYYLREAMAALQRYLPSNEFDAGDCDSDSESPADSPVDAFTGDHFRMYEFKIRRCSRGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQIRLNVNSPTPRSLNSPDSYDGSPLRQMALPLPFMSSPVSTTPPESPSPPMSPMAQSLSKSLGSSSINEMVASVRNLQLGKLKSIPSMPVNRNIALGPGFGSPRGSVLRPGFCSLPTTPTQVTGPGSGRVGYFDLWDQSCEEEPIMERVESGRDIRAKMFEKLSKENSLKNSDSGQPDGAPDVGWISDLVN* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0171 379 MobiDBLite consensus disorder prediction 354 379 - -
Tpr5g0171 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 154 IPR000571 GO:0046872
Tpr5g0171 379 MobiDBLite consensus disorder prediction 193 247 - -
Tpr5g0171 379 MobiDBLite consensus disorder prediction 193 210 - -
Tpr5g0171 379 MobiDBLite consensus disorder prediction 1 21 - -
Tpr5g0171 379 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 379 - -
Tpr5g0171 379 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Tpr5g0171 379 SMART c3hfinal6 164 187 IPR000571 GO:0046872
Tpr5g0171 379 PANTHER UNKEMPT FAMILY MEMBER 7 379 IPR045234 -
Tpr5g0171 379 MobiDBLite consensus disorder prediction 225 239 - -
Tpr5g0171 379 Gene3D - 129 192 - -
Tpr5g0171 379 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0171 Tpr-Chr5 2634815 2636352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0171 85 236 C2H2 Transcription Factor Family AT5G12850 59.119 1.35e-56 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr5g0171 zf-CCCH 1.4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0171 - - aprc:113867365 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0171 5 2634815 2636352 Tpr5g0171 5 2634815 2636352 ECH