Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0160 ATGAAGAGTCAAAATAGCTTAATTCTAGCTTATTATCTCTTTCTCATTCTCATTCACCATTTTACTACAACAAAAGCTTCTTTTGGTGTTGGTGTAGGTGTTGGGGGTGGAGTTGTTTGGATAGGGGGTGGAAATAACAACAATAACCAAAACCCAAAATCCTTTGAATCTCCAACATCTAAAATGGATTCAGCTTATTCAGTTCTACAAACATGGAAATCTTCCATCACTCATGACCCTTTAAAGATTCTAGATTCTTGGGTTGGTTCAAATGTTTGTTCATACAAAGGAATTTTCTGTGCAAATCCTGAAAATGGAATAGCTTCTACAACAGCTTCTGCTTCAGTAGTTGTTGCTGGAATAGATCTAAACCATGCAAATCTTAAAGGAACATTTGTAAAAGAATTATCTTTACTCACTGATATGACACTTCTTCATCTCAACAGTAACAGATTCAGTGGAACAGTTCCTGAAAACTTCAAAGATCTTGTTTCTCTTCAAGAGTTAGATTTAAGTTCATTACCTCAAGAGCTTTTCAACAAGAATCTTGATGCTATATTTCTCAACAATAATCAATTTGAAGGTGAAATTCCTACAAACTTAGGTAATTCACCTGCTTCTGTGATTAACTTAGCTAACAACAAATTGAGTGGAAATATTCCAGCTAGTTTTGGTTTCATGGGATCAAAGATAAAAGAGATTTTGTTTCTGAATAATCAGTTAACTGGTTGTATACCAGAAGGAGTTGGACTTTTTACTGAAATGGAAGTTCTTGATGTGAGTTTCAATTCATTGATGGGTCATTTACCTGATACATTATCTTGTTTACAGAATATTGAAGTGCTTAATTTGGCTCATAATCAGCTTTCTGGAGAATTATCTGATATAATCTGTTCTTTGAGAAGTTTGGCTAATCTAACTGTTGCTTATAATTTCTTTTCTGGGTTTAGTCAACAATGCTCAAAGCTGAATTTTAGGAATGTTGGTTTTGATTTTTCACTTAATTGTATTCCTGGGAGGATCATGCAGAGACCTGAACCTGAGTGTTCTATGATCCCAGGTGGAAGCTTAAGTTGTCTCAGAATTCCAACACCTAAACCTCTTGTTTGTGGTTCTATGTATGTAAGTGCTTCTAAGAACACTGATTCCACTTCACAATCACATTCTCCTTGA 1173 0.347 MKSQNSLILAYYLFLILIHHFTTTKASFGVGVGVGGGVVWIGGGNNNNNQNPKSFESPTSKMDSAYSVLQTWKSSITHDPLKILDSWVGSNVCSYKGIFCANPENGIASTTASASVVVAGIDLNHANLKGTFVKELSLLTDMTLLHLNSNRFSGTVPENFKDLVSLQELDLSSLPQELFNKNLDAIFLNNNQFEGEIPTNLGNSPASVINLANNKLSGNIPASFGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMEVLDVSFNSLMGHLPDTLSCLQNIEVLNLAHNQLSGELSDIICSLRSLANLTVAYNFFSGFSQQCSKLNFRNVGFDFSLNCIPGRIMQRPEPECSMIPGGSLSCLRIPTPKPLVCGSMYVSASKNTDSTSQSHSP* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0160 390 Gene3D Ribonuclease Inhibitor 64 176 IPR032675 -
Tpr5g0160 390 Gene3D Ribonuclease Inhibitor 177 231 IPR032675 -
Tpr5g0160 390 Pfam Leucine rich repeat N-terminal domain 64 100 IPR013210 -
Tpr5g0160 390 PANTHER LRR/EXTENSIN 173 387 - -
Tpr5g0160 390 PANTHER LRR/EXTENSIN 3 172 - -
Tpr5g0160 390 Gene3D Ribonuclease Inhibitor 232 353 IPR032675 -
Tpr5g0160 390 SUPERFAMILY L domain-like 66 323 - -
Tpr5g0160 390 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 173 387 - -
Tpr5g0160 390 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 3 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0160 Tpr-Chr5 2370987 2372858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0160 55 361 Leucine-rich Repeat extension Gene Families AT3G24480 43.440 6.88e-83 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0160 - - gsj:114407518 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0160 5 2370987 2372858 Tpr5g0160 5 2370987 2372858 ECH