Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0119 ATGAAACCACGCACCGATGAATACGAACAAGATAACGACGACGATAATGACGACGACGGTCTCAAAGAAGACATGGCTGCCCTCGCGCGAGCCTGTATGTTCAACGACGATGAAACTCAATCTCAAGAAGATCCACTTTTGGCCTCCGGAGACGCTATTGTCCCCTTCACTGTTACCGCCGACTCTGACTCCGATGAACAGAGTGACCTAGAATGTCTCAAGAGAGTTCAGAGTCTTTACCAGCCTAATAATGGCACTCTTCCTCCTCCGCAGCCGACTACAGCTACGTCCGACGATGATGAAGATGACTTCGAAACTGTTCGGGCCATTTTCAAACGGTTTTCTGCTTATGATGGAGGTGGAAGGGAAGCATGGGATGAGGAGAATCAGGCCTCGAGTTTAATCGGTGAGGGGTATGTTGCAAAGACCTCCATCTCTGACAACTCAGATACCGATGAATTGTGTCCTGATTCTGTATTACCTGATAATGACTCCAAGTTGCGGATTCAACCATGTGGTTTTGACGAGAGTTGTGAAAATGATGTCCACTTGTCTTCTCAATTACCGAAGAAAAGATCAAGCTTTCCTCCGTCAGCTCAAGCTTTTGTTGATGCCCTCAAGAAGAATAGAGTTCTCCAAAAATTTCTTAGAAATAAGTTGATTGATATTGAAGCAAAAATTGAGGAAAACAAAAGGCTAAGGGACAAAGTTAAAGTCCTTAAGGATTTCCAGGTTTCATGCAGTAAAAGAACGGCGAGTGCTTTATCATTGAAGAAGGATCCGTGTGTTCAGTTAATATCATCTAAGAAGTCTGTTGCAACAAATAAGTCAAAGAGCCATAATAAAAAAGTATCTGCAATGTGTTATGGCCCAGATGAGAATTCTCATGTTGCTAACTATAAGATGGTATTGGAAAGATTTCCGCATTCATTGGATCGGAAAAAATGGTCAAATAAGGAAAGGGAAAATCTTTCGAAGGGAATTAAGCAACAATTTCAAGAAACAGTGCTTCAAATTTCAGTAGATAGAATGAGTTCAGGTTGCTCACCTGGAGATGGAAATGACATGGATAGTATAATTGAATCAGTTAAAGGTATTGAAATTACACCAGCGAGGATTAGAGAATTTTTAACTAAAGTTAATTGGGATCGATTGGCTTCTATGTATGTTGCTGGCCGTACTGGTGTTGAATGTGAATCAAGGTGGTTGAATTGTGAAGACCCTTTGATCAACCATGGCCCATGGACTTTTGAAGAGGATAGGTCTCTTTTGAGTATTGTCCAAGAGAAGGGCATCAGGAACTGGTTTGATATTGCTGTATCATTGGCCACAAACAGGATTCCATTTCAATGCTTGGCACGATTCCAAAGGAGCTTAAATTCTTCGATGATAAATAGTGAATGGACTGAGGAAGAAGATGCCCAACTTTGTTCTGCTGTTGCATATTTTGGTGATAGTAATTGGCAGAATGTTGCTTCTGTTTTAGAACGGCGGACGGGAACCCAGTGCTCGAATAGATGGAAAAAATCAATTTTTCCTGTGAGGAAAGGGAGCTTTACTCTCGAGGAGGATGAACGCCTTACAGTAGCAGTCATGCTGTTTGGCCGGAAATGGAATCAAATAGCCAAATATGTTCCTGGCCGGATCCAATCTCAGTGTAGGGACAGATACGTTAATAGCTTGGATCCTTCTTTGAAATGGGGTGGGTGGACTGAGGAAGAGGATTTAAGATTAGAAGCTGCAATCACCAAGTATGGATATTGCTGGTCTAAGGTTGCTGAAGATGTGCCTCCCCGCACGGATTCCCAATGCCGAAAGAGATGGAAGGTGATATGTCCTGAACAAGTTCCTCTGCTTCAAGAAGCAAGAAAGCGGCGAAGGTCTCTTCTTGCCAGTAACTTTGTCGATCGAGAATCTGAACGTCCAGCCCTTACACTGAATGACTTTATTCCATTACAAATGGTAGTTTCAACATCTGATGTTGGTGCTGAAAATCTCCAAAGAAAGCGGAAGAGACAGACGCGTGGCGTTCCCAAGAAAGTGAAGTCAAAAAAGCATACAAAAAGGACTCAACTTTGTACTGAAGAAGTACAAGATGCAGGTCTTAGGGAAGAGAGGCCTAAAAGACATGCAAAGAAGAGATCATTCTATCCCGAGGTTGTACAAAATATAGTTCCCAAGAAAGAAAAGCCTAAAAGACATTCGAAGAAGGCTCGAATTTGTCCCGATGAAGACAGCATAACACTAGCATGCTTTTTGCACAACATATCAAAGAAAAAACTATCTAAATGTACCAAAAATGCTATATCATGTTGTGACAAGGTCAAGCCCTGTATCAACAGTTCGGAAACTCAAGATGGAGACAGCATAACACTTGCATGCTTTTTGCACAACAAATCAAAGAAAAAACTATCTAAATGTACCAAAAATGCAAGCCAGGCTTCGTCTTCCTCTAAGACAAAAACTGTATCTAAGCAGGTTGAAAATCAAATCTCATGTGGTGAGCAACACAGATTGTCTCTGTCATGTGATATTGATGGAACTAAAGATTTGCTAATGCAAGCGGAGGTTGATTCTAGCAGACAAGTGAGAAAACTGGAAATTGCAAATGCAGCTCGAAAACCAGATATGCCTCTTAAGTTCTATGTGAGAAAGAAAAAGAAATTGAGCCAAGCTAATCTAGGAAGCGGTGCATGCTCTCCCTCCAAATTAAAAAAGGGATCTACATTACTCCATGGAAACAAGTCAATCATTATTTCTGATGGCAGTGAACCATCCATGTCAAAAATTGTTGAAGACGAGACTGTTTTACATGGTGGTGTGGCTGAAGCTGAACCCACAACCATCAATGTGGCTGAAGAATATGCTGTTTTGCATGGTGGTGTGCCTGAAGGTGAACCCACAATCGTCAATGTTGTTGAAAAAGAGACTGTCCTGCATGGTGGTGTGGCTGATGCTAAACCCACAAACATCTATTTGGAAGAAAACGATGACCTGCTTATTTCCTTCCTGCAGAACAAGACAAAGAAACAACGAAGACGGATCAATATTCGGAAATGA 3060 0.4163 MKPRTDEYEQDNDDDNDDDGLKEDMAALARACMFNDDETQSQEDPLLASGDAIVPFTVTADSDSDEQSDLECLKRVQSLYQPNNGTLPPPQPTTATSDDDEDDFETVRAIFKRFSAYDGGGREAWDEENQASSLIGEGYVAKTSISDNSDTDELCPDSVLPDNDSKLRIQPCGFDESCENDVHLSSQLPKKRSSFPPSAQAFVDALKKNRVLQKFLRNKLIDIEAKIEENKRLRDKVKVLKDFQVSCSKRTASALSLKKDPCVQLISSKKSVATNKSKSHNKKVSAMCYGPDENSHVANYKMVLERFPHSLDRKKWSNKERENLSKGIKQQFQETVLQISVDRMSSGCSPGDGNDMDSIIESVKGIEITPARIREFLTKVNWDRLASMYVAGRTGVECESRWLNCEDPLINHGPWTFEEDRSLLSIVQEKGIRNWFDIAVSLATNRIPFQCLARFQRSLNSSMINSEWTEEEDAQLCSAVAYFGDSNWQNVASVLERRTGTQCSNRWKKSIFPVRKGSFTLEEDERLTVAVMLFGRKWNQIAKYVPGRIQSQCRDRYVNSLDPSLKWGGWTEEEDLRLEAAITKYGYCWSKVAEDVPPRTDSQCRKRWKVICPEQVPLLQEARKRRRSLLASNFVDRESERPALTLNDFIPLQMVVSTSDVGAENLQRKRKRQTRGVPKKVKSKKHTKRTQLCTEEVQDAGLREERPKRHAKKRSFYPEVVQNIVPKKEKPKRHSKKARICPDEDSITLACFLHNISKKKLSKCTKNAISCCDKVKPCINSSETQDGDSITLACFLHNKSKKKLSKCTKNASQASSSSKTKTVSKQVENQISCGEQHRLSLSCDIDGTKDLLMQAEVDSSRQVRKLEIANAARKPDMPLKFYVRKKKKLSQANLGSGACSPSKLKKGSTLLHGNKSIIISDGSEPSMSKIVEDETVLHGGVAEAEPTTINVAEEYAVLHGGVPEGEPTIVNVVEKETVLHGGVADAKPTNIYLEENDDLLISFLQNKTKKQRRRINIRK* 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0119 1019 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 12 907 - -
Tpr5g0119 1019 MobiDBLite consensus disorder prediction 78 95 - -
Tpr5g0119 1019 SMART sant 566 614 IPR001005 -
Tpr5g0119 1019 SMART sant 464 513 IPR001005 -
Tpr5g0119 1019 SMART sant 515 563 IPR001005 -
Tpr5g0119 1019 SMART sant 312 408 IPR001005 -
Tpr5g0119 1019 SMART sant 411 461 IPR001005 -
Tpr5g0119 1019 CDD SANT 570 609 IPR001005 -
Tpr5g0119 1019 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 468 515 IPR017930 -
Tpr5g0119 1019 CDD SANT 467 509 IPR001005 -
Tpr5g0119 1019 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 516 556 IPR017930 -
Tpr5g0119 1019 Pfam Myb-like DNA-binding domain 569 609 IPR001005 -
Tpr5g0119 1019 Pfam Myb-like DNA-binding domain 516 559 IPR001005 -
Tpr5g0119 1019 CDD SANT 518 561 IPR001005 -
Tpr5g0119 1019 ProSiteProfiles Myb-like domain profile. 562 612 IPR001005 -
Tpr5g0119 1019 SUPERFAMILY Homeodomain-like 443 510 IPR009057 -
Tpr5g0119 1019 MobiDBLite consensus disorder prediction 672 687 - -
Tpr5g0119 1019 CDD SANT 414 459 IPR001005 -
Tpr5g0119 1019 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 407 463 IPR017930 -
Tpr5g0119 1019 MobiDBLite consensus disorder prediction 663 689 - -
Tpr5g0119 1019 Pfam Myb-like DNA-binding domain 415 476 - -
Tpr5g0119 1019 Gene3D - 409 458 - -
Tpr5g0119 1019 Gene3D - 459 510 - -
Tpr5g0119 1019 MobiDBLite consensus disorder prediction 1 24 - -
Tpr5g0119 1019 SUPERFAMILY Homeodomain-like 388 440 IPR009057 -
Tpr5g0119 1019 Coils Coil 216 236 - -
Tpr5g0119 1019 Gene3D - 512 567 - -
Tpr5g0119 1019 MobiDBLite consensus disorder prediction 78 102 - -
Tpr5g0119 1019 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 562 616 IPR017930 -
Tpr5g0119 1019 SUPERFAMILY Homeodomain-like 513 608 IPR009057 -
Tpr5g0119 1019 Gene3D - 568 613 - -
Tpr5g0119 1019 Gene3D - 312 408 - -
Tpr5g0119 1019 ProSiteProfiles Myb-like domain profile. 407 459 IPR001005 -
Tpr5g0119 1019 ProSiteProfiles Myb-like domain profile. 460 511 IPR001005 -
Tpr5g0119 1019 ProSiteProfiles Myb-like domain profile. 515 561 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0119 Tpr-Chr5 1816409 1827932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0119 187 652 MYB-Related Transcription Factor Family AT3G18100 51.891 6.26e-171 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr5g0119 Myb_DNA-bind_6 3.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0119 K09422 - gmx:100818474 1010.36