Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0111 ATGGTTAATAATAATACTTCATCACTCTCTTCACCTTCATCACCACCACAATCATTGACTTGTTCTAGTGAAGAAGAAAAGAGAGGAAAAAAGAGAGATACTAACTCAGTTTATAGAGGAGTTAGAATGCGCACATGGGGAAAATGGGTATCCGAAATCCGAGAGCCGCGGAAGAAAAGTCGAATTTGGCTTGGAACATTTGCAACTGCCGAAATGGCAGCGCGTGCACATGACGCGGCTGCACTTACCATTAAAGGCTCGGCCGCAATCCTTAACTTCCCCGAACTCGCGGCTTCACTTCCTCGACCGGCTACCAGTTCGCGAAGAGATGTTCAAGCCGCAGCCGCTAAAGCAGCTTCCATGGTTGCCCCACCACAATCACCATTACCACCACCTTCTTCTAATTATTCTCCTTCCTCCTCCTCCTCGACGCCAGATGATCTGGGCGAGATTATTGAACTTCCGCAACTCGAAACCTGTTTTGAATCACCCGACCCGAATAATGAGTTTGTGTTTTTCGACCCGGTTGATTCTTCTCACTCATGGTATCATAGCATTTATGATAATGAAGAAGAGAATGGTTATGGTAGTGGATGCAACTTCAACTTGGAATCAATGCATGATCATGCAATTGACCATGAGAACACGTTTCTTTCATTGTGGCCATGA 669 0.4559 MVNNNTSSLSSPSSPPQSLTCSSEEEKRGKKRDTNSVYRGVRMRTWGKWVSEIREPRKKSRIWLGTFATAEMAARAHDAAALTIKGSAAILNFPELAASLPRPATSSRRDVQAAAAKAASMVAPPQSPLPPPSSNYSPSSSSSTPDDLGEIIELPQLETCFESPDPNNEFVFFDPVDSSHSWYHSIYDNEEENGYGSGCNFNLESMHDHAIDHENTFLSLWP* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0111 222 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Tpr5g0111 222 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Tpr5g0111 222 MobiDBLite consensus disorder prediction 1 36 - -
Tpr5g0111 222 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 5 194 - -
Tpr5g0111 222 SUPERFAMILY DNA-binding domain 36 95 IPR016177 GO:0003677
Tpr5g0111 222 MobiDBLite consensus disorder prediction 101 146 - -
Tpr5g0111 222 MobiDBLite consensus disorder prediction 1 22 - -
Tpr5g0111 222 CDD AP2 36 96 IPR001471 GO:0003700|GO:0006355
Tpr5g0111 222 Pfam AP2 domain 36 86 IPR001471 GO:0003700|GO:0006355
Tpr5g0111 222 Gene3D AP2/ERF domain 37 95 IPR036955 GO:0003700|GO:0006355
Tpr5g0111 222 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Tpr5g0111 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 194 - -
Tpr5g0111 222 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0111 Tpr-Chr5 1656640 1657493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0111 3 203 AP2-EREBP Transcription Factor Family AT5G11590 48.837 5.48e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr5g0111 AP2 4.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0111 K09286 - gmx:100804801 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0426 3 4487813 4489274 Tpr5g0111 5 1656640 1657493 PCT