Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0109 ATGGATTTGACATCAACTTCATCTGGAATTGCCCAAATGCCTGTTGTTGATAGTTCAGACACACTTGCTGATAGTTTGCAATGCTACTCTCCTACTAAAAAAGAAACTTGGGAGTCTCTTGCTTTTAAATCGGTTGAAGAGGTTGAAAAATTTTATGGTGATTATGCACTTAAAAGTGGGTTTTCAATTCGGATTTTGTTGAAATCAAGAAACAATTCACAGAATCAGCCAACTGATAAAATACACTATCTACGATATGGATGTAACAAACAAGGTTACAAGAAAGGAAGTTTGCTTGATCCGAAGAACAAGCCAAAATCAGAGAGTCCGGTTGTGGTTGAATTTGAGAAAGTAAAAGAAAAACCTGAGGAAAGGGTTGGTTGTACAGCTGCCATATTTTTGAAGTTGGATGAAACTCTGAATGTCTTTAAGATATACAAATGGGATGTGCCCCATTGTCATCCGTTACATAAACCGGAACATGGATGTTACTTGAGATCATTCAGACAAGTCAATGAAGTGCAAGGACAGCTTGCTGTAATAAATTCGAAAGCCGGGATGTCGATGAGAACTTCTTATGAAGTCATGGGTCAGGGAGTTGGAGGAACAGATAACTTGCCTTTTCGATTTTCGGATTTAAAGAATTATCTGATGACAAATCGGCAAAAAGAGATGCTAGTTGGTGAGGCAACCGTGATTCAAGATTTTTTTAGAAATGAAGCTCTGTCGAAACCATCCTTTTATTATGATATTCAAGTTGATGCTGCGGAAGATATAGCTAGTATTTTTTGGGCAGATGGGATTATGCAGCTTGATTATGCCTTATTTGGTGATGTTATAAGCTTTGATACAACTTACCGAACCAATAATCAGTATCGCCCTTTAGCTGCATTCATGGGCTTTGACAATCATCGTACAAGTGTGTTATTTGGCGCTGCCCTGTTGTATGACGAGACTGCAGCAACTTTTGACTGGTTGTTTACAACATTTTTGAAATGTATGTCCAATAAAAAACCACAATCGATATACACGGATCAGGCGACTGCATTGTTGAAGTCAGTTCCAAATATTTTTGAAGGTGTTTTTCATGGACTTTGCTCATGGCATATGGCAGAGAATGCAAAGAAGAATCTCGGGTCTCGTGCAAATAGTGCTTTTTTTGATGAGTTGAATATTTTGATTTCAAATGTTGAGACTGAATCAGATTTTGATTACAATTGGGATCAGATGATGAAAACCTGTTTTGATGGAAGGCCAACTGCAGACTTTAAGTGGCTTGTTCAAACTTACAGGAATCGTATGCATTGGTCTTCAGCTTGGGTCAAATCTCATTTTACTGCTGGTTTGAAAACAACTCAATTAAACTTTAAGGCTGCAAACACTAGAGCAAAAAACAATTATCCCAACAGTCAACTGATGCGGTCAGTTGTAAACAAATACACCCCAACTTGCTTTGCATTCATTCATAGGCAGTATGATTTTTCTTTCAAATACTTTTATGAAGAGGTCACACCCCAAGTTTCTGCATTTGATAAGGTTTTCAAAGTTTTTACAATTGTACATGTTGATGAACCTGAGGAAGTAGATGGTGTTAATTATGATGATGCTTGTAATGATGGGCCTTCAAACCGTGATGTTTTGGATGAAGAAGTTGCTGAAAACCTTTCCCCAAACTTTGAAAAGCATGATCGACTTGATGAACGGCTTGTGACAATTGATATTAGGGCCAAACGTATTAGCTGCACATGCCGTATGTTTGAGAACAGGGGTTTCTTGTGTCGACATGTTTTCAAAATATTGGAGTTTTTAGGTGGTTCTGTGCAATATCATGGTTTGAAGACAATACCTGCAGAATATGTGTTAAAGCGTTGGTGTAGAGATGTGCGTCAGTCTGTTAAATCTACTATCAATGTTGCCACTGAAGGCGCGACTCAAGCACAACGATATCAACAAATTTGTGCTGTTACAGTTAAGCTTTGTACACGTGTTTGTGCAGATCCTGAGGCTTCTCAAATTTTTCTTAATGGTGTTCTTGAAGCTGGGAGAAAGGCAGAGGAGTTGCTTACTTCGAAAGGTATTCATACAGTTCAATCTTCCGTGACGCCATCTAAGTCATCTTCCGTTACGCCATCTAAGTCTTGCAATACAGCAGCTGTCAGTGAAGCATCTGATGCTCAAAAGTCGACTGGTCCAAAGTTCAAAAAAAGACCAAATCCAATTAGATCAAAGAAACGACTTAAAAGTGATTATGAATTGGCTAGAGAACACCAGAAATTCCTTATACACCGGAAGAGAAAACAGAGAGGGGCTGAGGATTTAAAGGGGAAAGAGGCTGCTGATTGA 2343 0.3858 MDLTSTSSGIAQMPVVDSSDTLADSLQCYSPTKKETWESLAFKSVEEVEKFYGDYALKSGFSIRILLKSRNNSQNQPTDKIHYLRYGCNKQGYKKGSLLDPKNKPKSESPVVVEFEKVKEKPEERVGCTAAIFLKLDETLNVFKIYKWDVPHCHPLHKPEHGCYLRSFRQVNEVQGQLAVINSKAGMSMRTSYEVMGQGVGGTDNLPFRFSDLKNYLMTNRQKEMLVGEATVIQDFFRNEALSKPSFYYDIQVDAAEDIASIFWADGIMQLDYALFGDVISFDTTYRTNNQYRPLAAFMGFDNHRTSVLFGAALLYDETAATFDWLFTTFLKCMSNKKPQSIYTDQATALLKSVPNIFEGVFHGLCSWHMAENAKKNLGSRANSAFFDELNILISNVETESDFDYNWDQMMKTCFDGRPTADFKWLVQTYRNRMHWSSAWVKSHFTAGLKTTQLNFKAANTRAKNNYPNSQLMRSVVNKYTPTCFAFIHRQYDFSFKYFYEEVTPQVSAFDKVFKVFTIVHVDEPEEVDGVNYDDACNDGPSNRDVLDEEVAENLSPNFEKHDRLDERLVTIDIRAKRISCTCRMFENRGFLCRHVFKILEFLGGSVQYHGLKTIPAEYVLKRWCRDVRQSVKSTINVATEGATQAQRYQQICAVTVKLCTRVCADPEASQIFLNGVLEAGRKAEELLTSKGIHTVQSSVTPSKSSSVTPSKSCNTAAVSEASDAQKSTGPKFKKRPNPIRSKKRLKSDYELAREHQKFLIHRKRKQRGAEDLKGKEAAD* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0109 780 MobiDBLite consensus disorder prediction 698 727 - -
Tpr5g0109 780 MobiDBLite consensus disorder prediction 698 780 - -
Tpr5g0109 780 PANTHER OS01G0607050 PROTEIN 41 672 - -
Tpr5g0109 780 MobiDBLite consensus disorder prediction 743 758 - -
Tpr5g0109 780 SMART 26again6 579 606 IPR006564 GO:0008270
Tpr5g0109 780 MobiDBLite consensus disorder prediction 765 780 - -
Tpr5g0109 780 Pfam MULE transposase domain 279 373 IPR018289 -
Tpr5g0109 780 Pfam SWIM zinc finger 570 596 IPR007527 GO:0008270
Tpr5g0109 780 ProSiteProfiles Zinc finger SWIM-type profile. 570 604 IPR007527 GO:0008270
Tpr5g0109 780 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 41 672 IPR031052 GO:0006355
Tpr5g0109 780 Pfam FAR1 DNA-binding domain 50 157 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0109 Tpr-Chr5 1640072 1642948 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr5g0109 FAR1 7.1e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0109 - - mtr:MTR_0558s0020 471.855