Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0106 ATGGTATCTCAAGGTACCAATTTGATCCTATGGCGTTTTGTTTTGGCCATTGTGATTCTAATCTTTTTCACTCCAAAACTTAGTTTTGCCAAACAATCCAAGTTAATGGGCTTGAAAATGAATATGATTGATAGTTGTTGGAGAACAAATCTTGAATGGAGGAGGCATAGACAACAACTATCGACTTGTTCTGTAGGCTATGCTGGAAAGATGACAAACAACATTGGTAATGACCTCATACATTATAAAGTTACAGACCCAAATGATGATCCTTTAACTCCCAAACCTGGTACGTTGAGATACGGAGCTTCTGTAATTCAAGGTAAAGTGTGGATCACATTCCAAAAAGACATGAATATAAGACTCATGAAACCCCTTCTCATTAGTAGTTTCACTACCATTGATGGTCGCGGCGTCAATGTCCACATTGCTAATAATGCATGTTTGATGGTATTCAAGGCCACCAACATAATCATTCATAGCATTCGGATCCATCACTGCAAAGCTCAAGCACCGGGGATGGTGATGGGGCCTAATGGAAAGGTAATTCATTTGGGTCCAGTAGATGGAGATGCAATTAGATTGGTCACGGCTTCAAAAATTTGGATTGATCATAATACACTTTATAAATGTGAGGATGGGCTGCTTGATGTCACAAGAGGTTCAACTAACGTCACTATATCCAATAATTGGTTTAGAGAACAAGATAAGGTTATGCTTCTCGGTCATGATGATGGGTATGTCAGAGACAAGAACATGAAGATTACCGTTTTGTACAATCATTTTGGACCTAACTGCAACCAACGGATGCCTAGGATTCGCCATGGATATGCACATGTAGCCAACAATCTTTACTTAGGATGGATGCAATATGCTATTGGTGGAAGTATGGGACCTAGTCTCAAAAGCGAGGCTAATCTCTTCATAGCACCAAAAGTTGGGAGTAAAGAGGTAACATGGAGAAAAAATGGTAATACAAATGGAGACAAATGGGAATTTCATTCTGTAAGGGACGCATTTGAAAATGGAGCCTCCTTCAAAGTAACAAAAGGAGGACGTGTGCCAAAGCCGAACTATACCAAAGATCAAAGTTTTAAAGTTGTTGGTGTTAAATTTGTTAGATCATTGACAAGATCATCAGGCGCATTTCAAATTTCCAAAACAAGTTGTATGTGTGTATATTTCAAATGGCAAACACATTATTCTTCCGTAATTCACAGTCTCAACGCATTCTTTGGTCTTCTTCTTTGA 1251 0.3877 MVSQGTNLILWRFVLAIVILIFFTPKLSFAKQSKLMGLKMNMIDSCWRTNLEWRRHRQQLSTCSVGYAGKMTNNIGNDLIHYKVTDPNDDPLTPKPGTLRYGASVIQGKVWITFQKDMNIRLMKPLLISSFTTIDGRGVNVHIANNACLMVFKATNIIIHSIRIHHCKAQAPGMVMGPNGKVIHLGPVDGDAIRLVTASKIWIDHNTLYKCEDGLLDVTRGSTNVTISNNWFREQDKVMLLGHDDGYVRDKNMKITVLYNHFGPNCNQRMPRIRHGYAHVANNLYLGWMQYAIGGSMGPSLKSEANLFIAPKVGSKEVTWRKNGNTNGDKWEFHSVRDAFENGASFKVTKGGRVPKPNYTKDQSFKVVGVKFVRSLTRSSGAFQISKTSCMCVYFKWQTHYSSVIHSLNAFFGLLL* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0106 416 SUPERFAMILY Pectin lyase-like 40 348 IPR011050 -
Tpr5g0106 416 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Tpr5g0106 416 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Tpr5g0106 416 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Tpr5g0106 416 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Tpr5g0106 416 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Tpr5g0106 416 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Tpr5g0106 416 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Tpr5g0106 416 Pfam Pectate lyase 128 308 IPR002022 -
Tpr5g0106 416 SMART amb_all 117 314 IPR002022 -
Tpr5g0106 416 PANTHER PECTATE LYASE 2 388 - -
Tpr5g0106 416 Gene3D - 40 384 IPR012334 -
Tpr5g0106 416 PANTHER PECTATE LYASE 18-RELATED 2 388 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0106 Tpr-Chr5 1616319 1618864 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0106 71 318 Polysaccharide Lyase AT5G09280 72.177 7.67e-142 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0106 K01728 - gmx:100780437 675.626