Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0099 ATGAATCAACTTGGTATTAACCTTTTGATTCTCTCAATTTTCTTCTTCTATCATGTTAGAGCTCAAACACAAACTTCATCTTCACAAGATGTTGTCTCAAATTTCCAACCAAGTCTTGTTGTTGTCATAGGAATCCTTGGTCTCATGTTTTCATTAACATTTATTCTTCTTATTTTTGCCAAAGTGTGTCATAGGAGACAATTAAGTCCTCTTAGTGATGATCCAAATAATCAATTTCCAACACTCTTGAGATCAAGGTCAAGATTTTCAGGAATTGACAAAACATCAATAGAATCACTTCCATTTTTCAAATTCTCTTCTCTTAAAGGTTCAAAAGAAGGTTTGGAATGTTCAATATGTTTGTCAAAATTTGAAGACATAGAAATTTTAAGATTATTACCAAAATGTAAACATGCTTTTCATATTGATTGTATTGATCATTGGCTTGAAAAACATTCAAGTTGTCCTATTTGTAGACACAAAGTCAACATTGAAGATCAAACAACCTTTGCATATTCAAATAGTTTAAGGATGTTGGTAAATGAAGAATCAAACATAGAAATCTTTGTCCAAAGAGAAGAAGAAAATCAACATGGTTCATCAAGATTTAGTATTGGAAGCAGCTTTAGGAAAATTGGAAAAGGAAATACTAAAGAAGAAGAATTGCTTATACAAAAAGGAACAAAAGAAGAAAGTGACTTAATTGAATGTAATTACACGTGTCAGTGTCATGTTAACACTGGACACACCATCAATCAGAAGTGTCAGTGTTACAAAGCTTATCACAAACACAATCATCAGATTACTATGTCTGATGTTGTGTTTAAGCATAGATGGAGCAATGTTAGTTCTTCCGATCTTATGTTTTTGAATTCAGAGATGATTAATGCTACATCAAGTAACAGATTCAACAACATGGAAACAAAAATTTCATTTGAGAGCAAAGTTAGTGGAACTTTTAGTCATGCTGAAAAATATGTGAATCATCATCATGATGGTGAGAAAAGATCAGTGTCAGAAATCACAACTGTTTCTAGATTTAGAGATTTAGATATGAAGAAAAGGGTGATTGAAGATTCTTCTTTGGTTGAAAATAATCTTAGAGAAGAAAGAATGAGGAAGCTTTGGTTTCCAATTGTAAGAAGAACAGCTGAATGGTTTGTGAATAGAGAAAAAAGGTCTCAACAATCATTTGTAGATGTATAA 1206 0.3151 MNQLGINLLILSIFFFYHVRAQTQTSSSQDVVSNFQPSLVVVIGILGLMFSLTFILLIFAKVCHRRQLSPLSDDPNNQFPTLLRSRSRFSGIDKTSIESLPFFKFSSLKGSKEGLECSICLSKFEDIEILRLLPKCKHAFHIDCIDHWLEKHSSCPICRHKVNIEDQTTFAYSNSLRMLVNEESNIEIFVQREEENQHGSSRFSIGSSFRKIGKGNTKEEELLIQKGTKEESDLIECNYTCQCHVNTGHTINQKCQCYKAYHKHNHQITMSDVVFKHRWSNVSSSDLMFLNSEMINATSSNRFNNMETKISFESKVSGTFSHAEKYVNHHHDGEKRSVSEITTVSRFRDLDMKKRVIEDSSLVENNLREERMRKLWFPIVRRTAEWFVNREKRSQQSFVDV* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0099 401 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 396 - -
Tpr5g0099 401 SMART ring_2 117 158 IPR001841 -
Tpr5g0099 401 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Tpr5g0099 401 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 396 - -
Tpr5g0099 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 168 IPR013083 -
Tpr5g0099 401 CDD RING-H2_PA-TM-RING 116 159 - -
Tpr5g0099 401 SUPERFAMILY RING/U-box 97 165 - -
Tpr5g0099 401 Pfam Ring finger domain 116 159 IPR001841 -
Tpr5g0099 401 CDD SQR_QFR_TM 5 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0099 Tpr-Chr5 1522011 1523732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0099 13 395 C3H Transcription Factor Family AT4G28890 43.694 2.62e-101 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0099 K10664 - gmx:100803207 476.478