Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0075 ATGAATAGAGGTGTTGTGCAAAGTTCACCAGTGCAACAAATGATGGCTAGTAACCCTAATTGGTGGAACATCAATATCAATAACATGAGGCCTCCATCTCCACAACCTTCTCCTTTCTTTTCAACTCCTAATTCTAATTTTCTCATCCCTAATTATACACAAAATTCTTCATCTCTTCCTTTTCCTTCTTTTCATGACAATCATCAAGAGCTTCCTGAATCATGGAGCCAACTACTCATGAGTGGAATTGTGGGTGAGGAAGATAGGATTGGTATGAGCCAATTTCAAAATCAAATGCTAATGAGTCAAGCTCCAAATGCTTCTCTTGTTGATGTTAAACAAGAAAGTTCAGGAAATAGCTATGCATATGGACATGGAAATGAAGAACTTAATTCATGTGTGACAAGTTTCAACACAAACAACATGTTGGATTTTTCTAACAATAATAATAATAATAATATTGAAGTGAGGCATCCACCACAAGATCGATCTTCTGAGTGCAACAGCAGTGCATCTGGTGGGGTTATGAAGAAAGCTAGGGTTCAACAAGCTACAACTCAAACTACCTTCAAGGTTAGGAAGGAGAAATTAGGTGATAGAATTACTGCCCTTCATCAGCTTGTTTCCCCATTTGGAAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGTTACATCAGATTCCTTCAGAGTCAAATTGAGGCTCTTAGCTTACCATACTTGAACAATGGATCAGGAAACACAAGGCAACAACATTCAGTTCAAGGAGAGAAGAATTGTTTATTCCCTGAAGACCCTGGTCAGCTTTTAAATGAAAATAGCTTGAAGAGGAAAGCAGTTGAAGAGGTTTCTCAACAAGAACCAAAGAAGGACCTAAAGAGCAGAGGGCTGTGTCTTGTTCCAGTTTCATGCACACTACAAGTTGGGAGTGACAATGGAGCTGATTATTGGGCACCTGCCCTTGGAGGAGGTTTTCAGTAA 984 0.3943 MNRGVVQSSPVQQMMASNPNWWNININNMRPPSPQPSPFFSTPNSNFLIPNYTQNSSSLPFPSFHDNHQELPESWSQLLMSGIVGEEDRIGMSQFQNQMLMSQAPNASLVDVKQESSGNSYAYGHGNEELNSCVTSFNTNNMLDFSNNNNNNNIEVRHPPQDRSSECNSSASGGVMKKARVQQATTQTTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLNNGSGNTRQQHSVQGEKNCLFPEDPGQLLNENSLKRKAVEEVSQQEPKKDLKSRGLCLVPVSCTLQVGSDNGADYWAPALGGGFQ* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0075 327 CDD bHLH_AtbHLH_like 189 238 IPR045239 -
Tpr5g0075 327 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 313 - -
Tpr5g0075 327 Gene3D - 183 244 IPR036638 GO:0046983
Tpr5g0075 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 241 IPR036638 GO:0046983
Tpr5g0075 327 MobiDBLite consensus disorder prediction 158 182 - -
Tpr5g0075 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 230 IPR011598 GO:0046983
Tpr5g0075 327 PANTHER OS05G0228400 PROTEIN 17 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0075 Tpr-Chr5 1180462 1190858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0075 1 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 43.966 2.17e-67 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0075 - - gmx:100786555 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0075 5 1180462 1190858 Tpr5g0075 5 1180462 1190858 ECH
Tpr3g0412 3 4351956 4356308 Tpr5g0075 5 1180462 1190858 PCT