Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0067 ATGGATCCTCCAACAACAAGTTGGAGCATCCATACCCGACCCGAAATAACAACCAAATACGAAATCCTCAACCACATCGGCTCCGGTTCCTACGCCGACGTCTACCGTGGCCGTCGTATCTCCGACGGAACAACAGTCGCACTGAAAGAAGTCCACGATCACCAATCAGCATCAAGAGAAATCGATGCTTTGAAAATTCTTCGGGGCTCCGAAAACATTATTTTCATGCACGAGTTTTTCTGGCGAGAAGATGAAGACGCCGTGATTGTTCTTGAGTTTCTGAGGACTGATCTCGCCGCCGTGATTAGAGGTGCCGGAAGTGAGAGGATTGATGGTGGTGAAGTTAAAGGGTTGATGATGCAGATGGTTAGTGGGATCCACGCTTGTCATCGGAATAGGATTGTTCATAGAGACTTGAAGCCGGAAAATTTCTTGATTTCGGATGATGGGGTTGTTAAATTGGCAGATTTTGGACAGGCAAGGATACTTATCGAATCAAGATTTGATGCATCAAATCATGAAAGTTCATCACAACATCCTCGTGATGCTAATCCTTTATTAGACAACTCAAACCAAACCGAATTTGAAAATCAAGAGGAGGAGGAGGAAAAAATGAGTCATGATGAATATTTTAGAGTGTTAGATGAGCTGAAAATTAAGAGCCACACATACGATACCGATGATAAGGACACAAACACGCACGAAGGTAACAACTCGTGCCTTGCCACATGCACAACTAGTGATGACGACGATGATGCTTGGAAGAATTCTTTGCCATATGAAGGAGACGAAGAAGGAGGGAATGAAGAACATGGTTTTCTCACATCATGTGTTGGAACTAGATGGTTTAGGGCTCCGGAACTACTATATGGATCATCTAATTATGGTTTAGAGGTTGATCTTTGGTCATTAGGATGTGTTTTTGCCGAGTTGTTAACATTGAAGCCTTTGTTTCCTGGAACAGGTGATATTGATCAAATTAGTAGAATCATTAGTGTTTTGGGTAATCTTGATGAAGAAGCTTGGAATGGTTGTTCTAAACTTCCTGATTATGGAACAATTTCTTTTACTAAGGTGGAAAACCCTATTGGTCTTGAAGCATGCATGCCAAATTGTTTGCATGATGAAGTTTCCTTGGTGAAAAAATTGGTTTGTTATGATCCAGCTAGGAGAGTCACTACAATGGAGTTACTTCATGACAAGTACTTCTCTGAAGAACCACTTCCAGTTTCTGTTTCTCAACTGAGGGTTCCTCCTATAGCCGAAAAATGA 1272 0.4182 MDPPTTSWSIHTRPEITTKYEILNHIGSGSYADVYRGRRISDGTTVALKEVHDHQSASREIDALKILRGSENIIFMHEFFWREDEDAVIVLEFLRTDLAAVIRGAGSERIDGGEVKGLMMQMVSGIHACHRNRIVHRDLKPENFLISDDGVVKLADFGQARILIESRFDASNHESSSQHPRDANPLLDNSNQTEFENQEEEEEKMSHDEYFRVLDELKIKSHTYDTDDKDTNTHEGNNSCLATCTTSDDDDDAWKNSLPYEGDEEGGNEEHGFLTSCVGTRWFRAPELLYGSSNYGLEVDLWSLGCVFAELLTLKPLFPGTGDIDQISRIISVLGNLDEEAWNGCSKLPDYGTISFTKVENPIGLEACMPNCLHDEVSLVKKLVCYDPARRVTTMELLHDKYFSEEPLPVSVSQLRVPPIAEK* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0067 423 SMART serkin_6 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g0067 423 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Tpr5g0067 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Tpr5g0067 423 Gene3D Transferase(Phosphotransferase) domain 1 11 182 - -
Tpr5g0067 423 PANTHER CYCLIN-DEPENDENT KINASE 10 18 412 - -
Tpr5g0067 423 Gene3D Transferase(Phosphotransferase) domain 1 268 406 - -
Tpr5g0067 423 Pfam Protein kinase domain 271 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g0067 423 Pfam Protein kinase domain 20 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g0067 423 ProSiteProfiles Protein kinase domain profile. 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g0067 423 PANTHER CELL DIVISION PROTEIN KINASE 18 412 - -
Tpr5g0067 423 MobiDBLite consensus disorder prediction 170 193 - -
Tpr5g0067 423 MobiDBLite consensus disorder prediction 170 206 - -
Tpr5g0067 423 SUPERFAMILY Protein kinase-like (PK-like) 12 409 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0067 Tpr-Chr5 1070970 1073444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0067 4 419 Core Cell Cycle Gene Families AT4G28980 61.201 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Tpr5g0067 Pkinase 3.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0067 - - gmx:100802698 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0067 5 1070970 1073444 Tpr5g0067 5 1070970 1073444 ECH
Tpr3g0408 3 4333393 4335515 Tpr5g0067 5 1070970 1073444 PCT