Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0055 ATGGAGGAAGGTGAAGGAGGAGAAAGTGGTTCAAAGAATGTTGTTCCGCCAGAGTTTGTTGTGGCTGTTTCACCAACGGCGGCGGCTGCTACAACGGCGTGGTCGGATGCACCGGCGAAGAAGATAGTGAGGCAGCTTGATTTTAATACTATGACGGAACAATCGAAACCACCACAGCAGCTGTTGCAACCGATGACTGTAATGACGCAGAAACCAGTGGCTGGTTCGCCTTTGCCGCCTCCGCAGCCGATGATAGGACTTCAACACTGTTCTGTGAGGGTTGGGAAACCGGAATCTCCCAAACCAAAATCAAGACCTAACTTTGATATGAAAGAAGGTACTCCAAAGAAGCAAAAGCAATGCAACTGTAAACACTCTAAATGCTTAAAACTATATTGTGAATGTTTTGCATCGGGAATATATTGTGACGGTTGCAATTGTGTCAATTGTTTCAACAATGTTGATAACGAAGCTGCTAGACGAGAGGCTGTTGAAGCTACTTTAGAGCGTAATCCAAATGCATTTAGGCCCAAAATTGCAAGTAGCCCTCAAGGAGCACGAGATAGCAGGGAGGAGACTGGGGAAGGTTTAGTATTAATAAAACATAACAAGGGGTGCCATTGTAAAAAATCTGGCTGTCTTAAGAAGTACTGTGAATGCTTCCAAGCCAACGTTCTTTGTTCTGAGAATTGTAGATGCATGGACTGCAAGAACTTTGAGGGAAGTGAAGAGAGACAGGCTTTGTTTCATGGAGATCAAAATAACAACACATATATTCAGCAAGCGGCAAATGCTGCCATAACTGGAGCTATTGGTTCCTACGGCTATTCATCACCTCCAGTATCAAAGAAAAGAAAAGGTCAGGAACTCTTCTTGTGGCCTACATCCAAGGATCCATCAATTAGCAAGTCGGGACAACAGGTAAACCATGTTAAAGGTCCAGCAGCAGCATCCTCATCATTGTCACCTGTCCCAAATGCTCGAGTTGCAAATGCAACATTAGGTCAAAGTCCACAAAAATTAAAGTATAGGTCTCTTTTAGCAGACATTGTGCAACCACACCACCTCAAAGAGCTTTGTTCAGTTCTGGTGCTAGTATCAGGACAAGCTGCAAAGACACTTGCAGACCAGAAAAGTTCAGCAGAAAAACGTACAGAAGATCAGGCAGAAACTTCCCTTGCTTCTTCAACTCAAGAGCAATTGCCTAGTCAAAAAGACGTTGATGTTGAAAAGGCTATGGATGATGATTGTTCGAGTGCAAATCAAACAGATAAGATCAGCCCAAGTAATTCCTGTTCAGATGGTGCTGATGTCCCAAAAGGGAGGCCAATGTCTCCTGGGACTTTAGCTTTGATGTGTGATGAGCAAGATACAATGTTCATGAGAGCTTCCTCTCCCATTCGGCCTATGAACCATGCTTGCAACACATCTTCGCAATTTCCTAGTGGACAAGGAGTGACAGAGGTCTATGGCGAGCAAGAAAGGATTGTATTAACACAGTTTAGAGATTTTCTCAATAGAGTTATCACTATGGGAGAAATAAATGAGACAAAGTGTTCTTCCTTGGCTAGAAGTGAATTAGAGAATCAAAAGCATCCAATCAACAAGGAAACTGGAAATTCAAGTACTGACATAGTACATCAGCAGGAAGCTACTAGCAACGGCGATCCCAAAACTGTAGTTCCACCTATAGCCACAACTTCAACACCTGTGGTCCCTCGCGATGCTGTAGCTGAAAACGGAGAAACTAAGCAGGAGATGGAAAAAGAACTATGA 1776 0.4352 MEEGEGGESGSKNVVPPEFVVAVSPTAAAATTAWSDAPAKKIVRQLDFNTMTEQSKPPQQLLQPMTVMTQKPVAGSPLPPPQPMIGLQHCSVRVGKPESPKPKSRPNFDMKEGTPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVDNEAARREAVEATLERNPNAFRPKIASSPQGARDSREETGEGLVLIKHNKGCHCKKSGCLKKYCECFQANVLCSENCRCMDCKNFEGSEERQALFHGDQNNNTYIQQAANAAITGAIGSYGYSSPPVSKKRKGQELFLWPTSKDPSISKSGQQVNHVKGPAAASSSLSPVPNARVANATLGQSPQKLKYRSLLADIVQPHHLKELCSVLVLVSGQAAKTLADQKSSAEKRTEDQAETSLASSTQEQLPSQKDVDVEKAMDDDCSSANQTDKISPSNSCSDGADVPKGRPMSPGTLALMCDEQDTMFMRASSPIRPMNHACNTSSQFPSGQGVTEVYGEQERIVLTQFRDFLNRVITMGEINETKCSSLARSELENQKHPINKETGNSSTDIVHQQEATSNGDPKTVVPPIATTSTPVVPRDAVAENGETKQEMEKEL* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0055 591 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 118 153 IPR005172 -
Tpr5g0055 591 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 204 238 IPR005172 -
Tpr5g0055 591 PANTHER TESMIN/TSO1-RELATED 44 563 IPR028307 -
Tpr5g0055 591 MobiDBLite consensus disorder prediction 300 323 - -
Tpr5g0055 591 MobiDBLite consensus disorder prediction 530 566 - -
Tpr5g0055 591 ProSiteProfiles CRC domain profile. 117 241 IPR005172 -
Tpr5g0055 591 Coils Coil 584 591 - -
Tpr5g0055 591 MobiDBLite consensus disorder prediction 419 434 - -
Tpr5g0055 591 SMART CXC_2 116 156 IPR033467 -
Tpr5g0055 591 SMART CXC_2 201 242 IPR033467 -
Tpr5g0055 591 MobiDBLite consensus disorder prediction 404 418 - -
Tpr5g0055 591 MobiDBLite consensus disorder prediction 530 591 - -
Tpr5g0055 591 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 44 563 - -
Tpr5g0055 591 MobiDBLite consensus disorder prediction 375 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0055 Tpr-Chr5 878244 885544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0055 38 528 CPP Transcription Factor Family AT4G29000 54.820 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Tpr5g0055 TCR 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0055 - - gmx:100777698 829.32