Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0052 ATGTCAACTGCTCCGGCGCCGTCTTCGCCGCCGGCGGGGAACACCGCGCCTCCACCGTCAACCCCAGCAGCACCACCACCTGCAACACCTTCCTCACCACCACCTGCAACACCTTCATCACCACCTCCTGCAGTGCCGTCATCACCTCCACCGGCTACTCCCTCCGCTCCTCCGCCGGCAACTCCTTCAAAACCACCTCCGGCGACACCTTCAAAACCACCTCCGGCGACACCTTCAGCGCCTCCACCAGATACACCTTCAATTTCTCCACCAGCACCAAATACTCCGTCGACCACTCCACCGTCGAGTTCTCCGCCGTCACCGCCGTCGTTGACTCCCGGAAGTGGCACTACTCCAAGTCCACCATCACCACCTTCCACTAAAACTCCACCAAGCTCTGATCGAAGCCCAACACCACCTTCCTCCAAATCTCCACCATCGCCACCATCTCCACCGTCTTCTTCGTCAAGTATTTCTACCGGAGTAGTCGTCGGAATCGCTGTCGGAGCTGTGGCCATTCTTGTGGTTTTGAGCATTCTGTGCATGTGCTGTAGGAAGAAAAAGAGAAGACGTGATGAAGAATACTATGGTCAGCAGCATCACCAACCACCACCACCTCAGCGATCCAAAGTTGATCCTTATGGTGGTCCACCACAACAATGGCAGCATAATGCTCACCCTCCATCAGATCATTTAGTTTCAACTATACCTAAGCCGCCACCTCCTGCTCCAATTCCATCGCGACCGCCATCTCATGTTGCACCGCCACCGCCTCCTTTCATAAACAGCAGTGGTGGTTCTGGATCAAACTATTCAGGCGGCGAACTGCTTACACCTCCTTCTCCAGGCCTTGCATTTAGCTCCGCAAAGAGCACTTTTACTTACGAGGAGTTGGCACGTGCAACTGATGGCTTCTCTGATGCTAACCTCCTCGGACAAGGTGGATTTGGATATGTTCATAGAGGCATACTCCCTAACGGTAAAGAGGTTGCTGTTAAGCAGCTAAAAGCGGGAAGTGGACAAGGAGAACGTGAGTTTCAAGCTGAAGTAGAGATTATTAGCCGTGTACATCACAAGCATCTTGTTTCACTTGTTGGATACTGCAGCACTGGTTTTCAGAGGCTACTTGTTTATGAGTTTGTTCCAAATAATACATTGGAATTCCATTTACATGGAAAAGGACGACCAACAATGGATTGGGCAACAAGATTGAGAATTGCTTTGGGATCTGCAAAAGGATTGGCTTATCTTCATGAAGATTGTCATCCTAAGATCATTCATCGTGATATTAAAGCTGCTAACATTCTTCTGGATTTTAAGTTTGAAGCAAAGGTTGCTGACTTTGGTCTTGCAAAGATTGCTTCTGATCTGAATACTCATGTTTCTACTCGAGTGATGGGGACTTTTGGGTATCTGGCTCCAGAATACGCAGCTAGTGGAAAACTTACAGACAAATCAGATGTTTTCTCGTATGGAGTCATGCTCCTCGAGCTATTAACTGGACGGCGTCCGGTTGATAAAAACCAGACTTTCATGGAGGATAGTTTGGTAGAATGGGCTAGGCCTTTGCTCATGCGTGCTTTAGAAGAAGATAATCTTGATTCTCTGATTGATCCAAGGCTGCAGAATGAATTTGACCCTAATGAGATGACTCGTATGGTGGCATGCGCTGCAGCTTGCACTCGTCACTCAGCAAAGCGTCGACCAAGGATGAGTCAGGTTGTGCGCGCTTTAGAAGGAGATGTATCACTAGCAGATCTTAACGAAGGGATTAGGCCAGGACACAGTTCTGTTTACAGTTCTCATGAAAGCTCAGATTACGATACTCAACAATACAAAGACGACATGATCAAGTTCAGAAAAATGGCATTAGGAACTCAAGAGTACGCCGGAAGCAGCGAATACAGTGCAGCTACTAGCGAATATGGTCTAAACCCGTCTGGCTCAAGCAGCGAAACCCAAAGCCGCCAGACAACAAGGGAAATGGAAATGAGAAAGATGAAGAACAGTCAAGGATTTAGTGGAAGTTCATGA 2034 0.4857 MSTAPAPSSPPAGNTAPPPSTPAAPPPATPSSPPPATPSSPPPAVPSSPPPATPSAPPPATPSKPPPATPSKPPPATPSAPPPDTPSISPPAPNTPSTTPPSSSPPSPPSLTPGSGTTPSPPSPPSTKTPPSSDRSPTPPSSKSPPSPPSPPSSSSSISTGVVVGIAVGAVAILVVLSILCMCCRKKKRRRDEEYYGQQHHQPPPPQRSKVDPYGGPPQQWQHNAHPPSDHLVSTIPKPPPPAPIPSRPPSHVAPPPPPFINSSGGSGSNYSGGELLTPPSPGLAFSSAKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCSTGFQRLLVYEFVPNNTLEFHLHGKGRPTMDWATRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKIASDLNTHVSTRVMGTFGYLAPEYAASGKLTDKSDVFSYGVMLLELLTGRRPVDKNQTFMEDSLVEWARPLLMRALEEDNLDSLIDPRLQNEFDPNEMTRMVACAAACTRHSAKRRPRMSQVVRALEGDVSLADLNEGIRPGHSSVYSSHESSDYDTQQYKDDMIKFRKMALGTQEYAGSSEYSAATSEYGLNPSGSSSETQSRQTTREMEMRKMKNSQGFSGSS* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0052 677 MobiDBLite consensus disorder prediction 194 214 - -
Tpr5g0052 677 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 66 661 - -
Tpr5g0052 677 PRINTS Proline rich extensin signature 10 26 - -
Tpr5g0052 677 PRINTS Proline rich extensin signature 31 43 - -
Tpr5g0052 677 PRINTS Proline rich extensin signature 46 67 - -
Tpr5g0052 677 MobiDBLite consensus disorder prediction 630 677 - -
Tpr5g0052 677 MobiDBLite consensus disorder prediction 630 657 - -
Tpr5g0052 677 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 66 661 - -
Tpr5g0052 677 MobiDBLite consensus disorder prediction 10 153 - -
Tpr5g0052 677 Gene3D Phosphorylase Kinase; domain 1 281 380 - -
Tpr5g0052 677 SMART serkin_6 305 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g0052 677 Pfam Protein tyrosine and serine/threonine kinase 310 578 IPR001245 GO:0004672|GO:0006468
Tpr5g0052 677 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Tpr5g0052 677 ProSiteProfiles Protein kinase domain profile. 305 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr5g0052 677 Gene3D Transferase(Phosphotransferase) domain 1 381 588 - -
Tpr5g0052 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Tpr5g0052 677 SUPERFAMILY Protein kinase-like (PK-like) 284 578 IPR011009 -
Tpr5g0052 677 MobiDBLite consensus disorder prediction 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0052 Tpr-Chr5 841274 845638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0052 121 660 Trihelix Transcription Factor Family AT1G70460 49.724 1.42e-170 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Tpr5g0052 PK_Tyr_Ser-Thr 7.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0052 - - gmx:100781944 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0052 5 841274 845638 Tpr5g0052 5 841274 845638 ECH