Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0040 ATGGGGATGGAGCAAAACAACGTGATCGCACCGTTCATTATGAAGACATATCACATGGTTAACGAACCAAACACAGATAACCTTATCAAGTGGGGTCCATCAAACAACAGTTTCATCGTCCTTGATCCACTCCAATTCTCTCACTCTCTTCTTCCTGTTTTCTTCAAACACAACAATTTCTCTAGCTTTGTTCGTCAACTCAACACCTACGGTTTTAGAAAAGTGGATCCGGATAGATGGGAATTTGCGAATGAGTATTTTCTAAGAGGACAAAAACAATTATTGAAGAACATAGTTAGGAAGAAGCACGTTGGTGGAGTTGGAAATGGAAGGAACAATAATAATTATTTTAATGAGGTGAAATTTGAAGATTTAGAAGAAGATGAAGTTATGATGAAGGAAATATTGAAGCTAAAAGAAGAACAAAGAATTTTAGATGAAGAGCTTCAAGGAATGAACAAAAGATTAGAAACAACAGAGAAAAGACCACAACAAATGATGGCTTTTCTTTGCAATGTCGTTGAAGATCCTCAAATTCTATCAAGAATACTAAATGAGAGAGAAAAACAAATAATTGTTGAGACGAAAAAACGACGGTTTATATCTCCGCCGGAGACGGCGGCGATGACGGTGGCGACCACGTCAACTTCTTCGTCATCTTCCGGCATGGGGATAGCGAGTACCGTGAAGATGGAGTTTGATGAAGACGAGGTGACTGTTGCGAATAATATGACGTCGTCTTCGCCGGAGATGGGTTTTGAAATTGATTATTTCCACCGTGAGCCGCCGCAGGGGTTGACGCCGGCGGGTGATTGGTGGGGGCAGACACAGTTTGGACAAATGGGTTTTAGGAATGATTGTGCAGTTGTTCCGACACCGTTGACGGTGGTGTCTCCGGCGCCGGTGATGGGAGGTGGGAATAGCAATAGTAGAACGGAGTGTGTGGTTTTCAATGAAATGGCGGCGGAGAATAGTAAGTTGCCACCTTATCCTTTTTCATTGTTAGAAGGTGGCTTTTAG 1020 0.4225 MGMEQNNVIAPFIMKTYHMVNEPNTDNLIKWGPSNNSFIVLDPLQFSHSLLPVFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEYFLRGQKQLLKNIVRKKHVGGVGNGRNNNNYFNEVKFEDLEEDEVMMKEILKLKEEQRILDEELQGMNKRLETTEKRPQQMMAFLCNVVEDPQILSRILNEREKQIIVETKKRRFISPPETAAMTVATTSTSSSSSGMGIASTVKMEFDEDEVTVANNMTSSSPEMGFEIDYFHREPPQGLTPAGDWWGQTQFGQMGFRNDCAVVPTPLTVVSPAPVMGGGNSNSRTECVVFNEMAAENSKLPPYPFSLLEGGF* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0040 339 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr5g0040 339 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr5g0040 339 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr5g0040 339 PANTHER HEAT STRESS TRANSCRIPTION FACTOR C-1 10 333 - -
Tpr5g0040 339 Gene3D - 4 102 IPR036388 -
Tpr5g0040 339 SUPERFAMILY "Winged helix" DNA-binding domain 9 101 IPR036390 -
Tpr5g0040 339 Coils Coil 135 162 - -
Tpr5g0040 339 ProSitePatterns HSF-type DNA-binding domain signature. 51 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr5g0040 339 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr5g0040 339 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 333 IPR027725 -
Tpr5g0040 339 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0040 Tpr-Chr5 643543 645292 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0040 8 199 HSF AT3G24520 61.735 1.93e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tpr5g0040 HSF_DNA-bind 1.7e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0040 K09419 - gmx:100794896 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0040 5 643543 645292 Tpr5g0040 5 643543 645292 ECH