Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0030 ATGGCAAATCTCATTTTAGACTCATCCTTTGTAAAAATTCCAACTATAAAGTTTAAAAAGCTTTTCATCAATGGAGAATTCCTGGACTCAGTTTCAGGAAAAACGTTTGAGACCGTTGATCCAAGAACAGAGGAAGTGATCACAAAAATAGCAGAAGCTACAAAAGAAGACGTTGATATTGCTGTTAAAGCTGCTCGTGAAGCATTTGATTTTGGTCCATGGCCACGTATGCCTGGTGCTGAAAGAGCAAAGATTATGATGAAATGGGCAGGACTAATTGAAAAAAACATAGAAGAACTAGCAGCATTAGATACAATTGATGGAGGAAAGCTATATAGTTGGTGTAAGACAGTTGATGTACCTGAATCAGCCAATATCCTACGTTACTATGCTGGTGCTGCTGATAAAATTCATGGAGAAGTGTTCAAAACATCTAGGAATCTTCATTTGTATACATTGATGGAACCTATTGGTGTTGTTGGACACATTATACCTTGGAATGTTCCTAGTGTTATGTTCTTTGCTAAGGTTGCTCCTTCTTTGGCTGCTGGTTGTACTATGGTTCTTAAACCTGCTGAACAAACACCTCTCTCTGCTTTGTTTTATGCTCATCTTGCTAAGGAGGCTGGTATTCCAGATGGAGTGATCAATGTACTACCAGGATTTGGTTCAACTGCTGGAGCTGCAATATCTTCACATATGGACATTGATGCAGTAAGTTTTACAGGTTCAACCGAAACAGGCCGTCGAGTGATGCAGGCTGCGGCAATGAGCAATTTGAAGCCGGTATCGCTTGAATTAGGAGGAAAATCACCTGTCTTAGTTTTTGATGATGCTGATGTTGATAAAGCTGTTGATCTTGCTCTATTTGGTATCCTACACAATAAGGGAGAAATATGTGTTGCATTTTCAAGAGTTTTTGTCCAAGAAGGAATTTATGATGAATTTGAGAAGAAAGTGGTGGAAAAGGCAAAAAATTGGGTAGTTGGTGACCCTTTTCATCCTAAAGTTCAACAAGGACCACAAACTAGTAAGGTACAATTTGATAAAATTCTTTCCTATATTGAGCATGGAAAGAATGAAGGAGCTACACTATTAACTGGGGGTAAGAAAATAGGCAACAAAGGATACTACATTGAGCCTACTATTTTTACCAATGTTAAGGATGACATGCTAATAGCACAAGATGAAATATTTGGACCTGTGATGGTACTTTCTAAGTTCAAGACAATTGAGGAAGCAATTAAGAAGGCAAACAATACCAAATATGGCCTAGCAGCAGGGATTGTGACAAAAGATTTAGACATTGCCAATACTGTCTCAAGGTCAATTCGTGCAGGCATCATTTGGATCAATTGTTACTTTGCCTTTGATACTGATTGCCCTTTTGGAGGGTATAAGATGAGTGGATTTGGAAGAGATTATGGATTGGATGCACTTCACAAGTATCTTCAAGTTAAATCTGTTGCAACTCCTATTTACAATTCTCCATGGCTTTGA 1500 0.3833 MANLILDSSFVKIPTIKFKKLFINGEFLDSVSGKTFETVDPRTEEVITKIAEATKEDVDIAVKAAREAFDFGPWPRMPGAERAKIMMKWAGLIEKNIEELAALDTIDGGKLYSWCKTVDVPESANILRYYAGAADKIHGEVFKTSRNLHLYTLMEPIGVVGHIIPWNVPSVMFFAKVAPSLAAGCTMVLKPAEQTPLSALFYAHLAKEAGIPDGVINVLPGFGSTAGAAISSHMDIDAVSFTGSTETGRRVMQAAAMSNLKPVSLELGGKSPVLVFDDADVDKAVDLALFGILHNKGEICVAFSRVFVQEGIYDEFEKKVVEKAKNWVVGDPFHPKVQQGPQTSKVQFDKILSYIEHGKNEGATLLTGGKKIGNKGYYIEPTIFTNVKDDMLIAQDEIFGPVMVLSKFKTIEEAIKKANNTKYGLAAGIVTKDLDIANTVSRSIRAGIIWINCYFAFDTDCPFGGYKMSGFGRDYGLDALHKYLQVKSVATPIYNSPWL* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0030 499 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 265 272 IPR029510 GO:0016491
Tpr5g0030 499 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 23 487 IPR016162 GO:0016491
Tpr5g0030 499 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 269 458 IPR016163 GO:0016620
Tpr5g0030 499 PANTHER CYTOSOLIC ALDEHYDE DEHYDROGENASE 8 499 - -
Tpr5g0030 499 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 293 304 IPR016160 GO:0016491
Tpr5g0030 499 SUPERFAMILY ALDH-like 9 495 IPR016161 GO:0016491
Tpr5g0030 499 Pfam Aldehyde dehydrogenase family 30 489 IPR015590 GO:0016491
Tpr5g0030 499 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 8 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0030 Tpr-Chr5 437198 443129 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0030 8 499 Aldehyde Dehydrogenase Gene Family AT3G24503 71.197 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0030 K12355 - gmx:100784449 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0386 3 4150117 4155144 Tpr5g0030 5 437198 443129 PCT