Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0021 ATGAAGAATAAAGAGCATTGTTCTTATGTTATTGTTCTTTTTTCATTCTTCCTAGGTTTAACAACAACACTAGTAACATCATCTTCAAGTGTTGTTTCATCGTATAATGTCTTTGAACATGATGGGTCCCACCACTACCAATTCCAACAACATCATGAACTCACACAAGCTGAAACGATGTACATCAAACATCGACAACTTCTTTACTATAGAGATGAATTTGGTGACCGAGGTGAAAATGTTACGGTGGATCCAACCTTAGTTTTCTCAAACAACCGCATCAAAAACGCTTACGTGGCGTTACAAGCTTGGAAACAAGCTATTCTTTCTGATCCAAATAACTGTACTGTTAATTGGGTAGGTTCCAATGTATGCAACTACACAAATGTTTTCTGTGCACCCGCATTGGATAACCCTAAAATCTTAACCGTCGCCGGAATCGATCTAAATCACTGTGATATCGCCGGTTATTTGCCGGAAGAGCTTGGTCTTTTAACCGATCTTGCTCTTTTTCATGTCAATACTAACCGATTCTGTGGAACGGTTCCTCATAAGTTTGAGAAGCTGAAAATCTTGTTCGAGTTGGATCTGAGTAATAACCGTTTCGCCGGAAAGTTTCCGGAGGTTGTTTTACGGTTACCGGAGTTGAAGTTTTTAGATCTGAGGTTTAATGAATTTGAAGGAACGGTACCCAAGGAGCTTTTCGATAAAGATTTGGATGCGATTTTCATCAATCATAATCGGTTTGTGTTCGATTTACCGGATAATTTCGGTAATTCACCGGTTTCAGTTATTGTTCTGGCGAATAACCGTTTCCACGGTTGTTTTCCGGCGGGGATTGGTAACATGACGAATTTGAATGAAATTATTGCAATGAATAACGGTTTTCAGTCGTGTTTGCCGAAGGAGATAGGGTTGTTGAAGAATTTGACGGTGTTTGATGTTAGTTTTAATAAGTTATTGGGACCGTTACCGGCGACGGTTGGAAATGCGGTGAGTTTGGAGGTTTTGAATGTGGCGCATAATTTTCTTTCCGGTAAGATTCCGGAGAGTATTTGCGCGTTACCAAATTTGCAAAACTTTACTTATTCTTATAATTTCTTTACCGGTGAACCACCGAGATGTTTGGCTTTGCCGGAGGTGGATGATAAGAAGAATTGTTTGCCGGCGAGAAGTAATCAACGGTCGGCGAAGGAATGTAAGTCGTTTTTGTCTCACCGTGTTGATTGTAACTCTTTTAGGTGTAAAGCTTTTGTACCTTCTTTGCCTTCACCACCACCTTCACCGGTGTTTCCTCCACCTGTTGTTACTCCAATATCTCCACCACCGTCACCAGTATTTTCTCCACCTCCACCACCGTCACCAGTATTTTCTCCACCTCCACCACCACCAGTGTTTTCTCCACCACCACCGGTATACTCTCCACCGCCGCCTCCGCCACCAGTTTATTCACCACCGCCGCCACCTCCTTCACCACCACCACCTTCACCGCCACCACCACCTCCACCAGTGTATTCACCACCTCCACCTCCACCAGTGTATTCACCACCTCCGCCACCACCATCACCCCCACCACCTTCTCCACCACCACCACCTCCACCGGTATATTCACCACCACCGCCTCCACCTGTATATTCACCACCACCCCCTCCACCAGTATATTCACCACCACCACCCCCTCCCTCACCGCCACCACCATCACCCCCTCCTCCAGTTTACTTACCGCCACCACCTCCACCGCCTCCACCACCACCTTCACCAATTCCTCCACCACCATATTGTGTTAGGTCTCCGCCACCTCCGCCACCAAATTCACCACCGCCACCACCTCCACCGGCTCCTGTATTCTCCCCACCACCACCTGTACCATACTACTATAACTCACCTCCACCACCTTCTCATTCACCTCCACCACCACCACCTCATTCGCCTCCACCGCCACCTCACTCCCCTCCTCCACCTGTTTATCCCTATTTATCTCCCCCACCACCTCCTCCAATTCACTCACCTCCACCACCAGTCCATTCCCCACCACCACCATCTCCCCCACCTTGTATAGAACCACCACCACCTCCATCACCACCACCTTGTGAAGAACACTCACCTCCACCACCATATCAAACACCTTATCACCCACCACCATCCCCATCACCACCTCCACCACCAGTTTATTATGCACCACCAGTTCATTACAATTCACCCCCACCACCACCGGTATATTCTTCGCCTCCTCCACCAGTTCATTACAATTCACCCCCACCACCACCGATATATTCTTCGCCTCCTCCACCGGTTTATTCTTCGCCACCACCACCGGTCTCACCACCACCCACACCTGTATATGAAGGGCCATTACCACCAGTTGTTGGAATATCATATGCATCACCACCACCACCACCCTTTTATTGA 2409 0.4749 MKNKEHCSYVIVLFSFFLGLTTTLVTSSSSVVSSYNVFEHDGSHHYQFQQHHELTQAETMYIKHRQLLYYRDEFGDRGENVTVDPTLVFSNNRIKNAYVALQAWKQAILSDPNNCTVNWVGSNVCNYTNVFCAPALDNPKILTVAGIDLNHCDIAGYLPEELGLLTDLALFHVNTNRFCGTVPHKFEKLKILFELDLSNNRFAGKFPEVVLRLPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFVFDLPDNFGNSPVSVIVLANNRFHGCFPAGIGNMTNLNEIIAMNNGFQSCLPKEIGLLKNLTVFDVSFNKLLGPLPATVGNAVSLEVLNVAHNFLSGKIPESICALPNLQNFTYSYNFFTGEPPRCLALPEVDDKKNCLPARSNQRSAKECKSFLSHRVDCNSFRCKAFVPSLPSPPPSPVFPPPVVTPISPPPSPVFSPPPPPSPVFSPPPPPPVFSPPPPVYSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPVYSPPPPPPVYSPPPPPPSPPPPSPPPPVYLPPPPPPPPPPPSPIPPPPYCVRSPPPPPPNSPPPPPPPAPVFSPPPPVPYYYNSPPPPSHSPPPPPPHSPPPPPHSPPPPVYPYLSPPPPPPIHSPPPPVHSPPPPSPPPCIEPPPPPSPPPCEEHSPPPPYQTPYHPPPSPSPPPPPVYYAPPVHYNSPPPPPVYSSPPPPVHYNSPPPPPIYSSPPPPVYSSPPPPVSPPPTPVYEGPLPPVVGISYASPPPPPFY* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0021 802 Pfam Leucine Rich Repeat 333 355 IPR001611 GO:0005515
Tpr5g0021 802 SUPERFAMILY L domain-like 98 379 - -
Tpr5g0021 802 MobiDBLite consensus disorder prediction 477 501 - -
Tpr5g0021 802 Gene3D Ribonuclease Inhibitor 98 260 IPR032675 -
Tpr5g0021 802 PRINTS Proline rich extensin signature 427 443 - -
Tpr5g0021 802 PRINTS Proline rich extensin signature 451 468 - -
Tpr5g0021 802 PRINTS Proline rich extensin signature 469 494 - -
Tpr5g0021 802 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 33 489 - -
Tpr5g0021 802 MobiDBLite consensus disorder prediction 667 717 - -
Tpr5g0021 802 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 33 489 - -
Tpr5g0021 802 Gene3D Ribonuclease Inhibitor 262 414 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0021 Tpr-Chr5 257997 261469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0021 54 493 Leucine-rich Repeat extension Gene Families AT3G24480 65.227 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0021 - - mtr:MTR_6g086115 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0021 5 257997 261469 Tpr5g0021 5 257997 261469 ECH