Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0019 ATGGCAAGTCGATTTAAAGAAGACGAGAAAAACGAGCGCCTGATTCGAGGTCTTCTTAGGCTCGAACCGAATCGGAGATGTATTAACTGTAACAGTTTGGGACCACAATATGTGTGCACAAATTACTGGACGTTTGTTTGCACTAATTGTAGTGGAATACACCGTGAATTTACACATCGTGTGAAATCAGTTTCAATGGCTAAATTTACTTCGCAAGAAGTTACTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAGAGAGATTTATTTTAAAGAATGGGATGCACGTAATTCTTTCCCTGACAGCAGTAATGTTAACAGGCTCCGTGACTTTATTAAGCATGTTTATGTGGATAGGAGATTCACCGGAGATAGTACGTCTGACAAACCACCAAGAGTAAAGACCGGTGACAAAGATGGTTCAGATGAAAAGAGGAGAATTGAGGCATATCAAGGAGGATCTAAAAGCCCTCCATATGGAGACACACATGAACGTCGTTCTAGTCCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAATATGGTGATTATAAGAGAAGTCCTGGTCGTCCTCCAGTTATAACTGACTGGCGCCGTGAAGATCGTAGAACATCAGATGGAGATTATAAGGCGGAAAGCCAATCTCCTGAGAGAGTCAGCGGACTAGGCTCCTTAAGCCCACCCGTGGTCCGACCCGTTAGAGATATTTTGGGGGAAAATGTAGTACCTCTTAGAATAAGTGGACCTCCCAAACCAAGCAGTGGAAAAGCTGCAGATGCCTCAGCATTGACACAGAGAACTGCATCCTCTGGTAGCTTGGTATCGAGTAGTGAAAGCCAAGTAGATATTAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGCTGATCCTGAACCTATTGCTCCAACAATTTCTCAAGCCCAACAAACTAGTGTGCCGCAACCTGTTTTGCAGCAAGGAAATTCCAGTGATGACAATTGGGCCTCTTTTGATGTTGCTTCTGAGGCGAAAACAAATCCAAGCGCCTCAAATTTAAATCCACTTGAATCTGAATTGTCCCAATTGTCTGTGCCAGCATCTTTACCTTCTCATGCTTCAGGAGTCCAAGGACCTAATCCACCCAGTGGTGCTTCGGTTCCATTTCCCGGATTGGCAACTGCATCATCTCTTAATAATGCAGGACATTGGGCCAGTTTGCAGCATCAACAACCAACATTCCCCACCGTTGCTAGTCAACAATTTCCACCGTCAGTAGGCAGTGCTGTAAACAGTCAGCCACCACATGTACCTTATGTACCCACAGGACAGGGGCATCCGAATACACCAATACCACATGCATACCATCATGTCTCGAAGTTTTCCAATGAGGGTTTCAACAGTGTTGTTTCTCAACCTTCTGCTGCAGAAGTAAAACCAAGTGGAAGAACAGAACTTCCTGAAGATATGTTCACTGTAAAACACTCGTCCTTCCCTGCCTCAGGTCTAGGTTGGCAAATGGGTCTTCCCCAGGGCATGGGGATCTCAACGCAATATTATAATGCGATGTTACAGCCCGTGCCGAATTTTCCGCAGCCATCAAGGTCAACAAATCCATTTGATGTCAGCAGCAAACAAACCCCAGATCAAGCCCCAAGTTTTCCTTCCATGTCATCCTTGCATGGTGCGTTGCCTGGTGTATCGCCATCATTCCCGATGCAGCTTCCAAACCTGAGCAATCCATTGCATGCATGGAGTCCACCCCTGCCTAATGCAGGCACAATGCACTCTTCAAGCCTGGGTCATCCACCACATGCATGGACTCCTCCCCTGCAACCCTTTCAAGGTGCCCTGCCTAATATACCACCTTCAGGCACTATGCACCCTTCAAGCCAAGGCAATCCATCCCGTGCCTGGACTCCAACCCCATCGTCACCATATGCATCAGTCCTACCTCAACAAGCACACACTCATGCATCAACATTGGGAGCAGGGTCATACATGGGGCAACCAACGACAACCAACATACCAATGCCAAGGCAAGAAACTGGGAATTTCGGAACTCAGGGAATCATTTTCGGTTTGTCAAATCCAGATCAGCAGCTTACTCATAGGCCATCAACGACTCCCACCTCTAACCCCTTCCCTAAAGGAGGGAACCCATTCGGATAA 2157 0.4641 MASRFKEDEKNERLIRGLLRLEPNRRCINCNSLGPQYVCTNYWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVTALQEGGNQRAREIYFKEWDARNSFPDSSNVNRLRDFIKHVYVDRRFTGDSTSDKPPRVKTGDKDGSDEKRRIEAYQGGSKSPPYGDTHERRSSPGGRSPGYDQESRQYGDYKRSPGRPPVITDWRREDRRTSDGDYKAESQSPERVSGLGSLSPPVVRPVRDILGENVVPLRISGPPKPSSGKAADASALTQRTASSGSLVSSSESQVDIKLETTKSLIDFDADPEPIAPTISQAQQTSVPQPVLQQGNSSDDNWASFDVASEAKTNPSASNLNPLESELSQLSVPASLPSHASGVQGPNPPSGASVPFPGLATASSLNNAGHWASLQHQQPTFPTVASQQFPPSVGSAVNSQPPHVPYVPTGQGHPNTPIPHAYHHVSKFSNEGFNSVVSQPSAAEVKPSGRTELPEDMFTVKHSSFPASGLGWQMGLPQGMGISTQYYNAMLQPVPNFPQPSRSTNPFDVSSKQTPDQAPSFPSMSSLHGALPGVSPSFPMQLPNLSNPLHAWSPPLPNAGTMHSSSLGHPPHAWTPPLQPFQGALPNIPPSGTMHPSSQGNPSRAWTPTPSSPYASVLPQQAHTHASTLGAGSYMGQPTTTNIPMPRQETGNFGTQGIIFGLSNPDQQLTHRPSTTPTSNPFPKGGNPFG* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0019 718 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Tpr5g0019 718 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Tpr5g0019 718 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Tpr5g0019 718 SUPERFAMILY ArfGap/RecO-like zinc finger 11 122 IPR037278 -
Tpr5g0019 718 SMART arf_gap_3 12 129 IPR001164 GO:0005096
Tpr5g0019 718 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 129 IPR001164 GO:0005096
Tpr5g0019 718 PANTHER ARFGAP/RECO-RELATED 604 718 IPR044820 GO:0005096
Tpr5g0019 718 PANTHER ARFGAP/RECO-RELATED 376 585 IPR044820 GO:0005096
Tpr5g0019 718 PANTHER ARFGAP/RECO-RELATED 1 374 IPR044820 GO:0005096
Tpr5g0019 718 Pfam Putative GTPase activating protein for Arf 14 122 IPR001164 GO:0005096
Tpr5g0019 718 CDD ArfGap_AGFG 12 121 - -
Tpr5g0019 718 MobiDBLite consensus disorder prediction 194 215 - -
Tpr5g0019 718 MobiDBLite consensus disorder prediction 305 325 - -
Tpr5g0019 718 MobiDBLite consensus disorder prediction 260 284 - -
Tpr5g0019 718 MobiDBLite consensus disorder prediction 122 150 - -
Tpr5g0019 718 PANTHER ARF GTPASE ACTIVATOR 376 585 - -
Tpr5g0019 718 PANTHER ARF GTPASE ACTIVATOR 1 374 - -
Tpr5g0019 718 PANTHER ARF GTPASE ACTIVATOR 604 718 - -
Tpr5g0019 718 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Tpr5g0019 718 MobiDBLite consensus disorder prediction 296 325 - -
Tpr5g0019 718 MobiDBLite consensus disorder prediction 693 718 - -
Tpr5g0019 718 MobiDBLite consensus disorder prediction 529 551 - -
Tpr5g0019 718 MobiDBLite consensus disorder prediction 122 284 - -
Tpr5g0019 718 MobiDBLite consensus disorder prediction 693 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0019 Tpr-Chr5 223194 232616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0019 12 121 C2H2 Transcription Factor Family AT4G21160 33.621 1.56e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0019 - - mtr:MTR_6g086630 1018.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0019 5 223194 232616 Tpr5g0019 5 223194 232616 ECH