Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0016 ATGACTGTAAAGAAACAGGACTCGAAAAAAGTTTCTGGCATCAGCAACCAATGTTCAAGGAAGCAACATCGCAAGGGAGAAAACCCTATTCGATTTGTACCAGCTGCTGACCCTCCTCTTGATAATGGACATACAAACTCGTGGATCTGCAAAAACTCCGCTTGCAGGGCAGTTTTATCCAAAGAGGACACATTCTGTAGACGGTGCTCATGCTGTATTTGTCATCTTTTCGATGACAACAAGGATCCTAGTCTTTGGTTGGTATGCAGTGAATCTTCTCAAGGGGACTCATGCGGGTTATCTTGCCATATCGAGTGTGCTCTTCAACATGAGAAAGTTGGAGTTGTTGATCATGGACAACTTATGCAACTGGATGGTGGTTATTGTTGTGCCTCCTGCGGTAAAGTGACCGGCATACTTGGATGCTGGAAGAAGCAGCTTAATATAGCAAAAGATGCTCGGCGTGTGGATGTACTATGTTACAGGATATATTTGAGTTACAGGCTTCTGAATGGTACTTTAAGATTTAAAGAATTGCATGACATGGTACAAGAGGCAAAGGCTAAACTCGAGGAAGTCGGTCCAGTTGACGGTGTTTCTTCCAAGATGGTACGAGGCATTGTCAGTAGACTCCCTATTGCTAGTGATGTGCAGAAACTATGTTCTCTTGCTATCGAGAAGGCTGATGAGTTGTTGGCCACTGATGACAATCCTGAATCCAAAGAGGGCTCACTTCCTGCGGCATGTAAGTTTGTGTTTGAAGAGGTAACAGATTCCTCGGTCAAAATCATTCTACTTGAAATGCCAAATGTAGCTTCTGAGGACATTAAGGGATACAAGCTCTGGTATTACAAGACTAGGGGGGAGTCATACACAGAAGAACCTGTTTGTGAGTTTCCAAAAGATCAGAGGAGGATTTTGATATCCAATCTTCAGGCTTGCACAGAATATACTTTTCGGATTGTATCTCATACAGATAATGGTGACCTCGGTCATTCTGAGGCTAAGTGTTTCACCAAAAGCGTTGAGATATTTGTAAAGAAACCGACTTCATCAATTGACATGAATACTAAAATGGAGGATACTCAAAGTGGAGGAGGCAATGAATCGGGCTCCAAACTGGAGATTGATCCCACAATGACATACTCCGGATTCAAGGTTCGAGACCTTGGAAAGATTTTGCACCTAGCTTGGGCTCAAGAACAAGGTTGCTTTGAGGGGTTCTGCCGTGCCGATATTAAAAATTGCTGTGATCAAAGTGAAAAGATAAAAAACCCTATCAACCTGGAAGAGCAGTCGGCGCGGCCTTCGGTTTCTCGAGACCTTGATCTGAATGTTGTTTCTATGCCTGACTTGAACGAAGAACTCACTCCTCCTTTCGAGTCTTCTCGTGATGAAGACAATGGTTGCACTTTGCGGCAGGCTGTTGAGGCAGATGATGATGCAGCCTCTCTTGATTTAGAGAAAAACCTAGCAAGGCCACACGGTAGTGGTGGTTCCGAAACCTGGAACCACAGACCAACTGGAGAAGTTCCGGCTGTTGACTCGCGTGTAGTCGTAGAAGCAAGTAGGAAAAGGGTAGCAAGCACAAATGAAGAAACACATGACTGTGACAGCACTTTAATCAACGGTTCTCCTTTACATGTATCTGATGGTTCGTTCTCCTTAGACGAGAACTTTGAGTATTGTGTTAAAGTAATTCGTTGGCTAGAATGTCAGGGTCATATCAACAAAGAGTTTAGGCTTAAATTGCTTACATGGTTTAGTTTGAGGTCGACCGAACAAGAACGTAGGGTGGTTAATACTTTCATTCAGACATTGATTGATGATCCGAGTAGTTTGGCAGGCCAACTAGTTGACTCATTTTCTGATATTGTATCCAACAAGAGGCCAAGAAATGGATTCAGTAACAAGGCTGTGGCATTAAATTAA 1932 0.4332 MTVKKQDSKKVSGISNQCSRKQHRKGENPIRFVPAADPPLDNGHTNSWICKNSACRAVLSKEDTFCRRCSCCICHLFDDNKDPSLWLVCSESSQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLNGTLRFKELHDMVQEAKAKLEEVGPVDGVSSKMVRGIVSRLPIASDVQKLCSLAIEKADELLATDDNPESKEGSLPAACKFVFEEVTDSSVKIILLEMPNVASEDIKGYKLWYYKTRGESYTEEPVCEFPKDQRRILISNLQACTEYTFRIVSHTDNGDLGHSEAKCFTKSVEIFVKKPTSSIDMNTKMEDTQSGGGNESGSKLEIDPTMTYSGFKVRDLGKILHLAWAQEQGCFEGFCRADIKNCCDQSEKIKNPINLEEQSARPSVSRDLDLNVVSMPDLNEELTPPFESSRDEDNGCTLRQAVEADDDAASLDLEKNLARPHGSGGSETWNHRPTGEVPAVDSRVVVEASRKRVASTNEETHDCDSTLINGSPLHVSDGSFSLDENFEYCVKVIRWLECQGHINKEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIVSNKRPRNGFSNKAVALN* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0016 643 MobiDBLite consensus disorder prediction 1 25 - -
Tpr5g0016 643 PANTHER VIN3-LIKE PROTEIN 2-RELATED 2 639 IPR044514 GO:0010048|GO:0040029
Tpr5g0016 643 Coils Coil 643 643 - -
Tpr5g0016 643 ProSiteProfiles Fibronectin type-III domain profile. 245 344 IPR003961 GO:0005515
Tpr5g0016 643 Gene3D Immunoglobulins 244 343 IPR013783 -
Tpr5g0016 643 MobiDBLite consensus disorder prediction 490 512 - -
Tpr5g0016 643 MobiDBLite consensus disorder prediction 1 19 - -
Tpr5g0016 643 PANTHER VIN3-LIKE PROTEIN 1 2 639 - -
Tpr5g0016 643 SUPERFAMILY Fibronectin type III 251 329 IPR036116 GO:0005515
Tpr5g0016 643 Pfam Fibronectin type III domain 251 331 IPR003961 GO:0005515
Tpr5g0016 643 MobiDBLite consensus disorder prediction 355 375 - -
Tpr5g0016 643 Pfam PHD - plant homeodomain finger protein 50 167 IPR032881 -
Tpr5g0016 643 CDD FN3 250 329 IPR003961 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0016 Tpr-Chr5 187799 196521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0016 46 634 PHD Gene Family AT3G24440 49.091 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0016 - - gsj:114418583 1063.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0016 5 187799 196521 Tpr5g0016 5 187799 196521 ECH
Tpr3g0376 3 4040367 4048756 Tpr5g0016 5 187799 196521 PCT