Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0006 ATGTTCACATCAAGGAAGAAAATCAGCAAAGATAAGGGTGCTGAGCCAACTGAATTTGAGGAATCGGTTGGACAGGCTTTGTTTGATCTAGAAAACACAAACCATGAGTTGAAAAGTGAGCTGAAGGATTTATATATAAATTCAGCAGTTCAAATTGATGTTTCTGCAAACCGCAAGGCTGTACTTATCAATGTTCCCTTCAGATTGAGGAAGACTTTCCGCAAAGTTCAGGTCAGGCTTGTTAGGGAGCTTGAGAAGAAATTTAGCGGCAAGGATGTAATCCTGATTGCCACCAGGAGGATTGTAAGGCCTCCAAAGAAAGGTTCCGCTGCTCAGCGCCCCCGCAGCCGCACACTCACTGCTGTGCACGAGGCAATTCTGGAGGATGTCGTATTTCCTGCTGAGATTGTTGGAAAGCGTATTAGATACCGAGTTGATGGATCAAAGATCATGAAGGTGTTCTTGGACCCTAAGGAGAGGAACAATACCGAATACAAGCTGGAAACATTTACTGCAGTTTACAGAAAACTTTCAGGCAAAGATGTTGTGTTTGAGTATCCCGTTACTGAGGCTTAG 576 0.4392 MFTSRKKISKDKGAEPTEFEESVGQALFDLENTNHELKSELKDLYINSAVQIDVSANRKAVLINVPFRLRKTFRKVQVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAAQRPRSRTLTAVHEAILEDVVFPAEIVGKRIRYRVDGSKIMKVFLDPKERNNTEYKLETFTAVYRKLSGKDVVFEYPVTEA* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0006 191 Coils Coil 27 47 - -
Tpr5g0006 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Tpr5g0006 191 PANTHER 40S RIBOSOMAL PROTEIN S7 2 191 - -
Tpr5g0006 191 PANTHER 40S RIBOSOMAL PROTEIN S7 2 191 IPR000554 GO:0003735|GO:0005840|GO:0006412
Tpr5g0006 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0006 Tpr-Chr5 97551 100117 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0006 1 191 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 77.487 5.30e-113 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0006 K02993 - gmx:100527642 338.576