Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4961 AATGAAAGTCAAAATCATACATGGCATGCTGTTGCTTCATGGACTTGGGATGCGCAGGATGAAACGTGTGGGATTTGTAGGATGGCGTTTGATGGATGTTGTCCTGATTGTAAACTTCCTGGGGATGATTGTCCACTAATTTGGGGTGCATGCAATCATGCATTCCATTTGCATTGTATCTTGAAATGGGTGAATTCTCAAACCTCACAAGCACATTGCCCAATGTGCCGTCGGGAATGGCAATTTAAAGGTTGA 255 0.4353 NESQNHTWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4961 84 ProSiteProfiles Zinc finger RING-type profile. 34 77 IPR001841 -
Tpr4g4961 84 PANTHER RING BOX 5 83 - -
Tpr4g4961 84 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 6 83 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Tpr4g4961 84 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Tpr4g4961 84 SUPERFAMILY RING/U-box 7 83 - -
Tpr4g4961 84 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 5 83 - -
Tpr4g4961 84 CDD RING-H2_APC11 20 82 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4961 Tpr-Chr4 60332773 60335038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4961 34 77 C3H Transcription Factor Family AT1G72220 41.304 2.85e-06 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4961 K03358 - ini:109182621 198.364