Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4959 ATGTTCTCGAAAAACAAAACATGGTTACAAGGTTTCTCCTTCTTCCATTCTCCTTGTCCTCTCCAGAAAATTCAATGTACATTAATAGTTTTGTATGATCAACGCCTTCAAACATTCTCACAGAAATTGCTAGACATATGTAGTATTTCTGACAGATCTCTATGTTATCTCTTCACAATGTTTGATTCTGGTTACAAGTCACAGTATATTGGAGGTCAGAAAGAGAAATTTGTGAGGTTGGACGATTTGGATGCGAATTTGACTACGCCATCTAGCTCAAGAGGGATGAAGAAATTAAGATTTAATTTAGATTCTTTGCCTATTCCTTTTCGTGGTCGCGGAAGAAAAAACACATCAAAATCGTTTCGTGTAGGAGTGAGAAAGGGATCAGATGGACTAAAAAATATTGGAAGATCACTCAAAAGTGGAGTCACTACTTGGGCAGTGTTTCCAGAAGATCTTAAAGTGTCACAGAAAAAAGTATTTGATCCTCAAGATAAGAATCTTCTGTACTGGAACAAATTTTTCGAGATTCTTTGCATTCTTTCTATAGCTTGTGATCCTTTCTTTTTTTATCTTCCTTATTTCAACCACAAATCATATTGTTTAGCCATGGATAACCACCTAGCAAAGTATATTGTTACATTGAGAACAATATGTGATTGCATTTATCTCATCCGGATAAGTTTCCAATTCCGCACCGCCTTCATTGCGCCTTCATCTCGAGTATTTGGAAGAGGTGAACTTGTCATAGATCCTGGATTGATCGCGAAGCGATATTTACGACGCTACTTCGTTTTTGATTTCTGGTCTGTACTGCCATTGCCACAGATTGTATGGTATAAATATCTTTATAGTTCAAGACGTATGGAAGTATTGGATGCAAAAACATCACTATTGAGACATGTTATAATGCAATATTTACCGAGATTTGTACGCTTTATACCTTTGGCTTCAGAAGTTAAAAAAACAGCTGGTGTTTTTTCGGAAAATGCATTGCTTGGTGCCATGTACTATTTGATCTGGTATATGCTTGCTAGCCATATATCAGGTTCTGTCTGGTACTTATTATCCATAGAACGGAACGACACGTGCTGGACGAATGCATGTAAAGCAGTTCAAGGGTGTAATACACATTTTTTGTATTGTGGAAGTTCAAATAAGCATATACGAGGATATGAAAGTTGGAGAAATGTCAGTGAAAAGGTTCTTAAAAGTAAATGCTTTGTTGATGATGGTAACTCACCTTTTAATTATGGAATCTTCTCTCAAGCTATTGAGTCTGGTATTTGTTCTTCCATAGAAGTCTTTCCCAAATTTTGTTACTGTCTATGGTGGGGCCTTCAAAATTTGAGTACACTTGGTCAGGGGCTTCTAACTAGTACCTACCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGGCTTGTGCTTTTTTCTCTTTTGATTGGAAACATGCAGACCTACCTTAATTCAATGTCGGTTCGTCTGGAGGAAATGAGGATCAAAAGGCGTGACTCCGAGCAGTGGATGCATCATCGCTTGCTTCCTCCGGAGCTAAGGGAAAGAGTCAGACGTTACGACCAATACAAGTGGCTGAACACCCGAGGGGTCGATGAAGAAAGCTTGGTTCAGAATCTTCCAAAAGATCTCAGAAGAGATATCAAACGCCATCTTTGTTTGAATTTGGTCAGAAGGGTTCCTCTCTTTGCTAACATGGACGAACGCTTGCTTGATGCGATATGCGAGCGATTGAAACCAAGTTTATATACAGAGAAAACTTACATAGTTAGGGAAGGTGATCCAGTTGATGAGATGTTGTTCATCATTCGTGGTCGTCTAGATAGTGTTACTACAGATGGTGGAAGAAGCGGCTTTTTCAACAGAGGAATTTTGAAGGAAGGTGATTTCTGTGGTGAAGAGTTGCTAACATGGGCATTGGATCCAAAATCTGCTGCTAACTTGCCATCATCAACAAGAACAGTGAAAGCTATGAGTGAGGTAGAGGCATTTGCTTTAGAAGCAGAGGAATTAAAGTTTGTTGCATCACAGTTTAGACACATACATAGCAGACAGGTTCAGCATACGTTCCGATTCTACTCGCAACAATGGAGAACATGGGCTGCTATCTACATTCAAGCTGCATGGAGGAAGTATTTAAGGAGAAAACGCAGAAAGGAGGAGGAAGAAGAATATTATGAATCTGATTATCCGGGAAGTGATGATCCTTCACAGGCTTTGGTTCCGCGTACTGAAAGTTCGTCAAAATTTGGATTTAATACAACAATCTATGCTTCTCGGTTTGCTGCTAATCTTCGTGGTCATAGACATCGAGTTCCAAGTTCAAACGACCTGATGAACATTCCAAAGCCCCCAGAACCTGACTTCAGTGCTCTTGATAATGAAGAGTGA 2418 0.3929 MFSKNKTWLQGFSFFHSPCPLQKIQCTLIVLYDQRLQTFSQKLLDICSISDRSLCYLFTMFDSGYKSQYIGGQKEKFVRLDDLDANLTTPSSSRGMKKLRFNLDSLPIPFRGRGRKNTSKSFRVGVRKGSDGLKNIGRSLKSGVTTWAVFPEDLKVSQKKVFDPQDKNLLYWNKFFEILCILSIACDPFFFYLPYFNHKSYCLAMDNHLAKYIVTLRTICDCIYLIRISFQFRTAFIAPSSRVFGRGELVIDPGLIAKRYLRRYFVFDFWSVLPLPQIVWYKYLYSSRRMEVLDAKTSLLRHVIMQYLPRFVRFIPLASEVKKTAGVFSENALLGAMYYLIWYMLASHISGSVWYLLSIERNDTCWTNACKAVQGCNTHFLYCGSSNKHIRGYESWRNVSEKVLKSKCFVDDGNSPFNYGIFSQAIESGICSSIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLVLFSLLIGNMQTYLNSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESLVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEKTYIVREGDPVDEMLFIIRGRLDSVTTDGGRSGFFNRGILKEGDFCGEELLTWALDPKSAANLPSSTRTVKAMSEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRKYLRRKRRKEEEEEYYESDYPGSDDPSQALVPRTESSSKFGFNTTIYASRFAANLRGHRHRVPSSNDLMNIPKPPEPDFSALDNEE* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4959 805 MobiDBLite consensus disorder prediction 781 805 - -
Tpr4g4959 805 ProSiteProfiles cAMP/cGMP binding motif profile. 571 701 IPR000595 -
Tpr4g4959 805 ProSiteProfiles IQ motif profile. 707 736 IPR000048 GO:0005515
Tpr4g4959 805 SUPERFAMILY Voltage-gated potassium channels 164 493 - -
Tpr4g4959 805 Gene3D Jelly Rolls 569 689 IPR014710 -
Tpr4g4959 805 Gene3D - 173 496 - -
Tpr4g4959 805 CDD CAP_ED 571 702 IPR000595 -
Tpr4g4959 805 Gene3D Helix hairpin bin 498 562 - -
Tpr4g4959 805 MobiDBLite consensus disorder prediction 733 755 - -
Tpr4g4959 805 Pfam Ion transport protein 171 498 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tpr4g4959 805 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 71 801 - -
Tpr4g4959 805 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 71 801 - -
Tpr4g4959 805 Pfam Cyclic nucleotide-binding domain 592 681 IPR000595 -
Tpr4g4959 805 SMART cnmp_10 571 702 IPR000595 -
Tpr4g4959 805 SUPERFAMILY cAMP-binding domain-like 501 691 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4959 Tpr-Chr4 60302029 60306424 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4959 65 800 Ion Channels AT1G15990 66.844 0.0 976
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4959 K05391 - gmx:100810453 1207.59