Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4955 ATGTTTGATTCTGGTTACAAGTCACAGTATATTGGAGGTCAGAAAGAGAAATTTGTGAGGTTGGACGATTTGGATGCGAATTTGACTACGCCATCTAGCTCAAGAGGGATGAAGAAATTAAGATTTAATTTAGATTCTTTGCCTATTCCTTTTCGTGGTCGCGGAAGAAAAAACACATCAAAATCGTTTCGTGTAGGAGTGAGAAAGGGATCAGATGGACTAAAAAATATTGGAAGATCACTCAAAAGTGGAGTCACTACTTGGGCAGTGTTTCCAGAAGATCTTAAAGTGTCACAGAAAAAAGTATTTGATCCTCAAGATAAGAATCTTCTGTACTGGAACAAATTTTTCGAGATTCTTTGCATTCTTTCTATAGCTTGTGATCCTTTCTTTTTTTATCTTCCTTATTTCAACCACAAATCATATTGTTTAGCCATGGATAACCACCTAGCAAAGTATATTGTTACATTGAGAACAATATGTGATTGCATTTATCTCATCCGGATAAGTTTCCAATTCCGCACCGCCTTCATTGCGCCTTCATCTCGAGTATTTGGAAGAGGTGAACTTGTCATAGATCCTGGATTGATCGCGAAGCGATATTTACGACGCTACTTCGTTTTTGATTTCTGGTCTGTACTGCCATTGCCACAGATTGTAGTGTGGAAATATCTTTATAGTTCAAGACGTATGGAAGTATTGGATACAAAAACATCACTATTGAGACATGTTATAATGCAATATTTACCGAGATTTGTACGCTTTATACCTTTGGCTTCAGAAGTTAAAAAAACAGCTGGTGTTTTTTCGGAAAATGCATTGCTTGGTGCCATGTACTATTTGATATGGTATATGCTTGCTAGCCATATATCAGGTTCTGTCTGGTACTTATTATCCATAGAACGGAACGACACGTGCTGGACGAATGCATGTAAAGCAGTTGAAGGGTGTAATACACATTTTTTGTATTGTGGAAGTTCAAGTAAGCATATACGAGGATATGAAAGTTGGAGAAATGTCAGTGAAAAGGTTCTTAAAAGTAAATGCTTTGTTGATGATGGTAACTCACCTTTTAATTATGGAATCTTCTCTCAAGCTATTGAGTCTGGTATTTGTTCTTCCATAGAAGTCTTTCCCAAATTTTGTTACTGTCTATGGTGGGGCCTTCAAAATTTGAGTACACTTGGTCAGGGGCTTCTAACTAGTACCTACCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGGCTTGTGCTTTTTTCTCTTTTGATTGGAAACATGCAGACCTACCTTAATTCAATGTCGGTTCGTCTGGAGGAAATGAGGATCAAAAGGCGTGACTCCGAGCAGTGGATGCATCATCGCTTGCTTCCTCCGGAGCTAAGGGAAAGAGTCAGACGTTACGACCAATACAAGTGGCTGAACACCCGAGGGGTCGATGAAGAAAGCTTGGTTCAGAATCTTCCAAAAGATCTCAGAAGAGATATCAAACGCCATCTTTGTTTGAATTTGGTCAGAAGGGTTCCTCTCTTTGCTAACATGGACGAACGCTTGCTTGATGCGATATGCGAGCGATTGAAACCAAGTTTATATACAGAGAAAACTTACATAGTTAGGGAAGGTGATCCAGTTGATGAGATGTTGTTCATCATTCGTGGTCGTCTAGATAGTGTTACTACAGATGGTGGAAGAAGCGGCTTTTTCAACAGAGGAATTTTGAAGGAAGGTGATTTCTGTGGTGAAGAGTTGCTAACATGGGCATTGGATCCAAAATCTGCTGCTAACTTGCCATCATCAACAAGAACAGTGAAAGCTATGAGTGAGGTAGAGGCATTTGCTTTAGAAGCAGAGGAATTAAAGTTTGTTGCATCACAGTTTAGACACATACATAGCAGACAGGTTCAGCATACGTTCCGATTCTACTCGCAACAATGGAGAACATGGGCTGCTATCTACATTCAAGCTGCATGGAGGAAGTATTTAAGGAGAAAACGCAGAAAGGAGGAGGAAGAAGAATATTATGAATCTGATTATCCGGGAAGTGATGATCCTTCACAGGCTTTGGTTCCGCGTACTGAAAGTTCGTCAAAATTTGGATTTAATACAACAATCTATGCTTCTCGGTTTGCTGCTAATCTTCGTGGTCATAGACATCGAGTTCCAAGTTCAAACGACCTGATGAACATTCCAAAGCCCCCAGAACCTGACTTCAGTGCTCTTGATAATGAAGAGTGA 2241 0.3971 MFDSGYKSQYIGGQKEKFVRLDDLDANLTTPSSSRGMKKLRFNLDSLPIPFRGRGRKNTSKSFRVGVRKGSDGLKNIGRSLKSGVTTWAVFPEDLKVSQKKVFDPQDKNLLYWNKFFEILCILSIACDPFFFYLPYFNHKSYCLAMDNHLAKYIVTLRTICDCIYLIRISFQFRTAFIAPSSRVFGRGELVIDPGLIAKRYLRRYFVFDFWSVLPLPQIVVWKYLYSSRRMEVLDTKTSLLRHVIMQYLPRFVRFIPLASEVKKTAGVFSENALLGAMYYLIWYMLASHISGSVWYLLSIERNDTCWTNACKAVEGCNTHFLYCGSSSKHIRGYESWRNVSEKVLKSKCFVDDGNSPFNYGIFSQAIESGICSSIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLVLFSLLIGNMQTYLNSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESLVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEKTYIVREGDPVDEMLFIIRGRLDSVTTDGGRSGFFNRGILKEGDFCGEELLTWALDPKSAANLPSSTRTVKAMSEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRKYLRRKRRKEEEEEYYESDYPGSDDPSQALVPRTESSSKFGFNTTIYASRFAANLRGHRHRVPSSNDLMNIPKPPEPDFSALDNEE* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4955 746 Gene3D - 114 437 - -
Tpr4g4955 746 CDD CAP_ED 512 643 IPR000595 -
Tpr4g4955 746 Gene3D Jelly Rolls 510 630 IPR014710 -
Tpr4g4955 746 SUPERFAMILY cAMP-binding domain-like 442 632 IPR018490 -
Tpr4g4955 746 MobiDBLite consensus disorder prediction 674 696 - -
Tpr4g4955 746 Gene3D Helix hairpin bin 439 503 - -
Tpr4g4955 746 Pfam Ion transport protein 112 439 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tpr4g4955 746 ProSiteProfiles cAMP/cGMP binding motif profile. 512 642 IPR000595 -
Tpr4g4955 746 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 742 - -
Tpr4g4955 746 SMART cnmp_10 512 643 IPR000595 -
Tpr4g4955 746 MobiDBLite consensus disorder prediction 722 746 - -
Tpr4g4955 746 Pfam Cyclic nucleotide-binding domain 533 622 IPR000595 -
Tpr4g4955 746 SUPERFAMILY Voltage-gated potassium channels 105 434 - -
Tpr4g4955 746 ProSiteProfiles IQ motif profile. 648 677 IPR000048 GO:0005515
Tpr4g4955 746 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 12 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4955 Tpr-Chr4 60275219 60279611 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4955 6 741 Ion Channels AT1G15990 67.200 0.0 985
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4955 K05391 - gmx:100810453 1214.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4955 4 60275219 60279611 Tpr4g4955 4 60275219 60279611 ECH